Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B14
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   8.5  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   8.5  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 642 TKXCXKSYHRG*LACW 689
           TK C   Y R  L+CW
Sbjct: 107 TKNCVNPYDRDSLSCW 122


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 21  QARVNGGSNYDSLKVAKCLAHLISDAH 101
           +A  + GS+    ++ +CL H I +AH
Sbjct: 133 RAACHSGSSLTKSRLMRCLHHDIENAH 159


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/30 (33%), Positives = 11/30 (36%)
 Frame = +3

Query: 693 PSVHNRPCFXDPSMSAPSYXLXNXNSPNRW 782
           PS+H    F D  M    Y      S N W
Sbjct: 459 PSIHFAQLFADRGMKVYYYFFTQRTSTNLW 488


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 276 SSLKNHYFHCFITYSVGRK 332
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 255 VGDRFARSSLKNHYFHCFI 311
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 255 VGDRFARSSLKNHYFHCFI 311
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,960
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)