Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP18_FL5_B10
(877 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.69
02_02_0300 - 8746526-8747224,8749033-8749089,8749414-8749650,875... 30 2.1
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.5
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.5
06_01_1041 - 8174344-8174574 28 8.5
04_04_1553 - 34363848-34366058,34369087-34370451 28 8.5
03_02_0111 + 5688649-5688942 28 8.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.5
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 8.5
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.5
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 31.9 bits (69), Expect = 0.69
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -3
Query: 341 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVRGGESR 165
H P AAA P VP++ P L + S GG GL S S + G + D G+ GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGI-GGSHG 64
Query: 164 SYVARSESIMRDSDVAFSHSAALAIAQVRR 75
+ + + + D+++ L I RR
Sbjct: 65 LHKSGTATTGLPFDISWRRQDRLQIVVSRR 94
>02_02_0300 -
8746526-8747224,8749033-8749089,8749414-8749650,
8750061-8750172,8750258-8750538,8752032-8752244,
8753105-8753636,8753871-8753899
Length = 719
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 101 RQNAKTQHHCPS*STRSSQRTIGTPPPGLQNRSQPDPAFE 220
R N+ Q CP+ T ++ T G P LQN SQ FE
Sbjct: 299 RNNSFLQDFCPTNGTDNADPTFGIYLPALQNVSQSTSFFE 338
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 239 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 355
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 245 VHRANTGRSSNELDRQTTELERRGVG 322
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>06_01_1041 - 8174344-8174574
Length = 76
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 333 WLVSSE-RLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCIKR 461
WL S E R WR +V AAA A LR R + G SC++R
Sbjct: 17 WLPSLEQRRWRRRLVREAAAAAVA----LRTRSGDGGDGSCVRR 56
>04_04_1553 - 34363848-34366058,34369087-34370451
Length = 1191
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 297 LSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRA-RVSNNGSVSCIKRLDIS 473
+ W + C +W S L R VV L+ + + + R V+ G + C++RLD+S
Sbjct: 521 VGWGPNDTSCCSWTGISCDLGR--VVELDLSNRSLSRNSFRGVAVAQLGRLPCLRRLDLS 578
Query: 474 T 476
T
Sbjct: 579 T 579
>03_02_0111 + 5688649-5688942
Length = 97
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 316 SGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPA*SAWT 468
+ AAA P G + + PPP L+ P+Y + AP SA+T
Sbjct: 33 TAAAAAATGPHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 423 GRGERSPRRWLQPRLAVPRQASTSVPRTP 337
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 324 CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCIKRLDISTPISMXLDN 500
CS++L R+W +++ + LRA +N S + +D+STP + LDN
Sbjct: 137 CSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT--LDN 190
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 420 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 298
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,342,240
Number of Sequences: 37544
Number of extensions: 520198
Number of successful extensions: 1509
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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