Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B07
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    31   0.28 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.6  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   3.5  
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1...    27   3.5  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +2

Query: 542 YASSHPSPAISATSTRSSNXRFHTPTXPRLTSIPS 646
           Y SS  S  IS +ST   N  FH PT    TS  S
Sbjct: 795 YLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSS 829


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 20/97 (20%), Positives = 37/97 (38%)
 Frame = +3

Query: 270 CSXXLYFDLXGTXMXSNXVTXQSLPNVSSIIKGYRXTYLVNLEAVVXPSAPSLKIPVTAD 449
           C+         T + S  +T  +    +S+   Y  T + +    +  S P    PVT  
Sbjct: 473 CTTSTSIPYTSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTT 530

Query: 450 LCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATP 560
            C T+  V      V +TP ++       ++ + +TP
Sbjct: 531 NCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTP 567



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +3

Query: 315 SNXVTXQSLPNVSSIIKG--YRXTYLVNLEAVVXPSAPSLKIPVTADLCWTTADVTVEGV 488
           +N  T  S+P  S+ +       T      +V   S P    P+T   C T+  +     
Sbjct: 425 TNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTST 484

Query: 489 NVLATPSSSRITIGGLALMHQATP 560
            V +TP ++       ++ + +TP
Sbjct: 485 PVTSTPLTTTNCTTSTSVPYTSTP 508


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +2

Query: 548 SSHPSPAISATSTRS---SNXRFHTPTXPRLTSIPSIP*XRTKXXPPRG 685
           S HP P+IS T+T S   S    H PT P        P  + +  PP G
Sbjct: 270 SEHPKPSISTTTTGSSYRSAESSHAPTTP--DHFKLTPLTKLEPQPPSG 316


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 548 SSHPSPAISATSTRSSNXRFHTPTXPRLTSIPS 646
           +S P  ++S+         FHTPT PR T + S
Sbjct: 120 NSSPPNSLSSQPKHQEFHLFHTPTIPRTTQLSS 152


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +3

Query: 504 PSSSRITIGGLALMHQATPPLRSRLHQPDHQXPDSIHQPXPDLHPFHQSPD 656
           P++    I  LA   +  PP+   L  PD Q         P+L  F  +PD
Sbjct: 74  PANELSDISSLAEKGELEPPMAKLLSDPDFQGKQFPTVEAPELFIFELAPD 124


>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 544 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSAVTGILR 425
           I A P   +R     AS+ TP+  T+A+ QQ     GI+R
Sbjct: 9   IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,427
Number of Sequences: 5004
Number of extensions: 41510
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)