Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B07
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0194 + 32249846-32250562                                         31   1.6  
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423...    29   3.7  
07_03_0600 + 19866757-19867218,19867920-19868429                       29   4.9  
08_02_1474 - 27365548-27366054                                         29   6.4  
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333...    29   6.4  
03_05_0067 - 20460206-20460703,20461255-20461530                       28   8.5  
02_01_0302 - 2021221-2023305                                           28   8.5  

>03_06_0194 + 32249846-32250562
          Length = 238

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 642 GMDVSLGXVGVWNRXFDDRVDVAEIAGEGW 553
           G D+SLG +G W R F    D+  +  +GW
Sbjct: 132 GRDLSLGFIG-WGRRFGGGTDIGRLRVQGW 160


>01_06_1263 +
           35840502-35841308,35841763-35841969,35842272-35842370,
           35843361-35843464,35844521-35844698,35844774-35845244,
           35845383-35845523,35846290-35846349,35846427-35846490,
           35847295-35847524,35847606-35847704
          Length = 819

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 527 WRSRPYASSHPSPAISATSTRSSNXRFHTPTXPRLTSIPSIP 652
           WRS   A++ P P  SATS      +   PT PR+   P++P
Sbjct: 256 WRSDAGATAVPPPQGSATSDALRVNKIQIPTNPRIA--PTLP 295


>07_03_0600 + 19866757-19867218,19867920-19868429
          Length = 323

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 730 PPXHWAMAKXGFPPPYFQAGNDEIPXPSXP 819
           PP  +   +   PP Y+QAG    P P  P
Sbjct: 38  PPQPYCQQQQPLPPHYYQAGPPHAPPPQQP 67


>08_02_1474 - 27365548-27366054
          Length = 168

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 654 QGIDGMDVSLGXVGVWNRXFDDRVDVAEIAGEG 556
           Q +DGM    G VGVW R   D       AG G
Sbjct: 73  QRVDGMGALCGEVGVWRRKIGDSRRSGGAAGGG 105


>01_01_0448 -
           3332238-3332330,3332414-3332481,3332570-3332618,
           3332716-3332798,3332900-3333023,3333389-3333486,
           3333555-3333634,3333712-3333782,3333872-3333953,
           3334158-3334237,3334365-3334416,3334843-3334958
          Length = 331

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 566 AISATSTRSSNXRFHTPTXPRLTSIPSIP*XRTKXXPPR 682
           A S+T+TR S  R H PT P     P +P  R++  P R
Sbjct: 2   AASSTATRLSPPRLHAPTTPS----PHLPLRRSRFSPLR 36


>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/30 (50%), Positives = 15/30 (50%)
 Frame = +1

Query: 730 PPXHWAMAKXGFPPPYFQAGNDEIPXPSXP 819
           PP  WAM     PP YFQAG    P P  P
Sbjct: 6   PPPQWAMGPPP-PPQYFQAG----PPPPPP 30


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 551 SHPSPAISATSTRSSNXRFHTPTXPRLTSIP 643
           SHPSP  S+T+  S +    TPT P   S P
Sbjct: 517 SHPSPPSSSTAPPSHSPPQSTPTHPSYPSPP 547


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,050,031
Number of Sequences: 37544
Number of extensions: 382356
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)