Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B07
         (874 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF053091-1|AAC06254.1| 2715|Drosophila melanogaster eyelid protein.    33   0.68 
AE014297-2398|AAN13750.1| 2716|Drosophila melanogaster CG7467-PB...    33   0.68 
AE014297-2397|AAS65166.1| 2556|Drosophila melanogaster CG7467-PC...    33   0.68 
AE014297-2396|AAF55457.1| 2703|Drosophila melanogaster CG7467-PA...    33   0.68 

>AF053091-1|AAC06254.1| 2715|Drosophila melanogaster eyelid protein.
          Length = 2715

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 540  LMHQATPPL--RSRLHQPDHQXPDSIHQPXPDLHPFHQSP 653
            +M Q  PP+  ++   QP  Q P S   P P  HP HQ P
Sbjct: 1704 MMSQKPPPMPGQAMQQQPLQQQPPSHQHPHPHQHPQHQHP 1743


>AE014297-2398|AAN13750.1| 2716|Drosophila melanogaster CG7467-PB,
            isoform B protein.
          Length = 2716

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 540  LMHQATPPL--RSRLHQPDHQXPDSIHQPXPDLHPFHQSP 653
            +M Q  PP+  ++   QP  Q P S   P P  HP HQ P
Sbjct: 1705 MMSQKPPPMPGQAMQQQPLQQQPPSHQHPHPHQHPQHQHP 1744


>AE014297-2397|AAS65166.1| 2556|Drosophila melanogaster CG7467-PC,
            isoform C protein.
          Length = 2556

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 540  LMHQATPPL--RSRLHQPDHQXPDSIHQPXPDLHPFHQSP 653
            +M Q  PP+  ++   QP  Q P S   P P  HP HQ P
Sbjct: 1545 MMSQKPPPMPGQAMQQQPLQQQPPSHQHPHPHQHPQHQHP 1584


>AE014297-2396|AAF55457.1| 2703|Drosophila melanogaster CG7467-PA,
            isoform A protein.
          Length = 2703

 Score = 32.7 bits (71), Expect = 0.68
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 540  LMHQATPPL--RSRLHQPDHQXPDSIHQPXPDLHPFHQSP 653
            +M Q  PP+  ++   QP  Q P S   P P  HP HQ P
Sbjct: 1692 MMSQKPPPMPGQAMQQQPLQQQPPSHQHPHPHQHPQHQHP 1731


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,549,640
Number of Sequences: 53049
Number of extensions: 596522
Number of successful extensions: 1639
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1637
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4229643912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)