Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP18_FL5_B07
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 29 3.3
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 29 3.3
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 29 3.3
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 29 3.3
U97551-4|AAB52859.2| 154|Caenorhabditis elegans Groundhog (hedg... 29 5.7
U41039-6|AAK68626.1| 135|Caenorhabditis elegans Synapse defecti... 29 5.7
U41039-5|AAL11488.1| 357|Caenorhabditis elegans Synapse defecti... 29 5.7
U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defecti... 29 5.7
U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defecti... 29 5.7
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 28 7.6
U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fus... 28 7.6
EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell f... 28 7.6
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 564 LRSRLHQPDHQXPDSIHQPXPDL-HPFHQSP 653
L S P HQ P S+HQP P + + F SP
Sbjct: 43 LNSHYSSPIHQPPTSLHQPIPMMQNQFKASP 73
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 564 LRSRLHQPDHQXPDSIHQPXPDL-HPFHQSP 653
L S P HQ P S+HQP P + + F SP
Sbjct: 40 LNSHYSSPIHQPPTSLHQPIPMMQNQFKASP 70
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 564 LRSRLHQPDHQXPDSIHQPXPDL-HPFHQSP 653
L S P HQ P S+HQP P + + F SP
Sbjct: 49 LNSHYSSPIHQPPTSLHQPIPMMQNQFKASP 79
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 564 LRSRLHQPDHQXPDSIHQPXPDL-HPFHQSP 653
L S P HQ P S+HQP P + + F SP
Sbjct: 42 LNSHYSSPIHQPPTSLHQPIPMMQNQFKASP 72
>U97551-4|AAB52859.2| 154|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 14 protein.
Length = 154
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 396 EAVVXPSAPSLKIPVTADLCWTTADVTVEGVNVLATPSSSRITIGGLAL 542
E ++ PSAP+LK +C D +G N + PS + I +A+
Sbjct: 80 EIMMGPSAPTLKTNFNGTICQHAGD---DGFNYVVYPSPGKYDINNVAV 125
>U41039-6|AAK68626.1| 135|Caenorhabditis elegans Synapse defective
protein 9, isoformb protein.
Length = 135
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 727 HPPXHWAMAKXGFPPPYFQAGNDEIPXPSXP 819
H P H M+ G+PPP A +E P P P
Sbjct: 84 HLPIHMTMSH-GYPPPLVAAPVEEKPAPEQP 113
>U41039-5|AAL11488.1| 357|Caenorhabditis elegans Synapse defective
protein 9, isoforma protein.
Length = 357
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 727 HPPXHWAMAKXGFPPPYFQAGNDEIPXPSXP 819
H P H M+ G+PPP A +E P P P
Sbjct: 306 HLPIHMTMSH-GYPPPLVAAPVEEKPAPEQP 335
>U41039-4|AAL11489.1| 452|Caenorhabditis elegans Synapse defective
protein 9, isoformd protein.
Length = 452
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 727 HPPXHWAMAKXGFPPPYFQAGNDEIPXPSXP 819
H P H M+ G+PPP A +E P P P
Sbjct: 401 HLPIHMTMSH-GYPPPLVAAPVEEKPAPEQP 430
>U41039-3|AAK68627.2| 537|Caenorhabditis elegans Synapse defective
protein 9, isoformc protein.
Length = 537
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 727 HPPXHWAMAKXGFPPPYFQAGNDEIPXPSXP 819
H P H M+ G+PPP A +E P P P
Sbjct: 384 HLPIHMTMSH-GYPPPLVAAPVEEKPAPEQP 413
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 28.3 bits (60), Expect = 7.6
Identities = 29/105 (27%), Positives = 38/105 (36%), Gaps = 2/105 (1%)
Frame = +2
Query: 500 HPFILSHYY--WRSRPYASSHPSPAISATSTRSSNXRFHTPTXPRLTSIPSIP*XRTKXX 673
H +H+Y R RP HP+ IS + H P R TS P +
Sbjct: 1928 HKLASTHFYAVCRERP----HPTTVISPPQQPQQPKKMHIPPVTRATSPPPPAQKSPQPA 1983
Query: 674 PPRG*TSXVIXSSHQPYFTPPXTGQWLKXGFPPLISKLEMMKSPP 808
P T + S Y PP G + G PP+ + L S P
Sbjct: 1984 PFHSITEPL--SVIIDYPVPPPLGSLV--GLPPMPAYLSSNSSLP 2024
>U28928-1|AAA68334.3| 589|Caenorhabditis elegans Anchor cell fusion
failure protein1 protein.
Length = 589
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 491 IDSFNCDVSSSPTKVSCDWYFEARGGRXNDSLKIDK 384
++ +C V+S P K CD + R GR ++K+ +
Sbjct: 156 VEPLDCPVTSIPAKACCDIKLKPRDGRMFRAVKLQQ 191
>EF205023-1|ABP04049.1| 589|Caenorhabditis elegans anchor cell
fusion failure-1 protein.
Length = 589
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 491 IDSFNCDVSSSPTKVSCDWYFEARGGRXNDSLKIDK 384
++ +C V+S P K CD + R GR ++K+ +
Sbjct: 156 VEPLDCPVTSIPAKACCDIKLKPRDGRMFRAVKLQQ 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,094,185
Number of Sequences: 27780
Number of extensions: 265568
Number of successful extensions: 593
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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