Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP18_FL5_B06
(902 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.13
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.18
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 27 0.18
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.31
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.41
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.54
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.54
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.71
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.71
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.71
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.71
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.71
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.71
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.94
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 25 1.2
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.6
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 3.8
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 6.7
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.13
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 299 GCSTWLVXSERLWRPDVVLLNAA 367
G T V SE +W PD+VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA 367
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA 367
V S+ +WRPD+VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.5 bits (58), Expect = 0.18
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA 367
V S+ +WRPD+VL N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 27.5 bits (58), Expect = 0.18
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA-ATTAGDYALRARVSNN 415
+ RLW+PDV++ N+A G Y V NN
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNN 133
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 26.6 bits (56), Expect = 0.31
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 299 GCSTWLVXSERLWRPDVVLLNAA 367
G + V SE +W PD+VL N A
Sbjct: 91 GVTELYVPSEHIWLPDIVLYNNA 113
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 26.2 bits (55), Expect = 0.41
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 299 GCSTWLVXSERLWRPDVVLLNAA 367
G V SE +W PD+VL N A
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA 126
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.54
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +1
Query: 118 STRSSQRTIGSLPPXSKIVXNLTLHLRHANIRESESTVRILAXLQMNWIDXRLXWNAXAM 297
S + +R + + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 298 G 300
G
Sbjct: 124 G 124
Score = 25.4 bits (53), Expect = 0.71
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA-ATTAGDYALRARVSNNXS 421
+ +LW+PD+++ N+A G Y V++N S
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.54
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +1
Query: 118 STRSSQRTIGSLPPXSKIVXNLTLHLRHANIRESESTVRILAXLQMNWIDXRLXWNAXAM 297
S + +R + + ++ +TL + ++ E + A L++ W+D L WN
Sbjct: 65 SYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEY 123
Query: 298 G 300
G
Sbjct: 124 G 124
Score = 25.4 bits (53), Expect = 0.71
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA-ATTAGDYALRARVSNNXS 421
+ +LW+PD+++ N+A G Y V++N S
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.71
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 205 NIRESESTVRILAXLQMNWIDXRLXWNAXAMG 300
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.2
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA 367
+ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.71
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 205 NIRESESTVRILAXLQMNWIDXRLXWNAXAMG 300
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.2
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA 367
+ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.71
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 205 NIRESESTVRILAXLQMNWIDXRLXWNAXAMG 300
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.2
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA 367
+ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.71
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 205 NIRESESTVRILAXLQMNWIDXRLXWNAXAMG 300
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.2
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA 367
+ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.71
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 205 NIRESESTVRILAXLQMNWIDXRLXWNAXAMG 300
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.8 bits (49), Expect = 2.2
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA 367
+ +LW+PD+++ N+A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.4 bits (53), Expect = 0.71
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 205 NIRESESTVRILAXLQMNWIDXRLXWNAXAMG 300
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.0 bits (52), Expect = 0.94
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA-ATTAGDYALRARVSNNXS 421
+ +LW+PD+++ N+A G Y V++N S
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.0 bits (52), Expect = 0.94
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 326 ERLWRPDVVLLNAAATTAGDYALR 397
+++W+PD+VL N A G+Y +R
Sbjct: 106 DKVWKPDIVLFNNA---DGNYEVR 126
Score = 21.8 bits (44), Expect = 8.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Frame = +1
Query: 205 NIRESESTVRILAXLQMNWIDXRLXWNAXAMG 300
N+ E ++ L+ W D +L W+ G
Sbjct: 65 NVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 24.6 bits (51), Expect = 1.2
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 187 LHLRHANIRESESTVRILAXLQMNWIDXRLXWNA 288
L ++H N+ E TV L++ W L W +
Sbjct: 66 LSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 317 VXSERLWRPDVVLLNAA 367
V R+WRPD +L N A
Sbjct: 82 VPYNRVWRPDTILYNNA 98
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.0 bits (47), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 110 GQ*CCVFAFCRTSYSTSEEKXVTRII 33
G+ CC F T Y + K VT+ I
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQCI 627
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 6.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 326 ERLWRPDVVLLN 361
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,633
Number of Sequences: 438
Number of extensions: 2479
Number of successful extensions: 34
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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