Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_B04
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.3  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    27   4.4  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   5.8  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   5.8  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    26   7.6  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 253  FEHVRSTAKKKHYAXXNTXSGTPQERECSIRKSCNNVSVTSMEDLXHEEI 402
            F+   +  K+K Y      SG   +   SIRK+C N+ +     L H  +
Sbjct: 1709 FDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +1

Query: 178 FNKIMSTLKLTSXVGSGLYSHWRDVFEHVRSTAKKKHYAXXNTXSGTPQEREC-SIRKSC 354
           F+K++ST+   S   + L   WRD  +HV    +          S       C       
Sbjct: 384 FSKMLSTI---SNEITNLQGDWRDQLDHVEFLQEHLGPLEVELASVKVLYDNCFQAGIEE 440

Query: 355 NNVSVTSMEDLXHEEIVTSYVLAHVAQF 438
           N+ ++ S EDL HE  +T+ ++A+  ++
Sbjct: 441 NDYTMFSYEDLEHEFGITANIIANKIKY 468


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 355 NNVSVTSMEDLXHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 480
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 4   WIRWTCACLVHLLY--PCLRCVIXR 72
           W+ WTC+ L++ LY   C R +I R
Sbjct: 27  WVFWTCSYLLNFLYHHHCSRDLIRR 51


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 795 DFXXVNFSSPTETXXLSCLLAC 730
           D   VN SSP +   LSCL  C
Sbjct: 137 DILAVNHSSPLDVLVLSCLYNC 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,102,124
Number of Sequences: 5004
Number of extensions: 57303
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)