Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_A13
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    27   0.28 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   2.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 573 VAAEHRSHNARQREVLSYDRERGRRVARRIQS 478
           +A +      RQRE     R+RG ++AR I S
Sbjct: 433 LAGDESFRKRRQREAAGNCRKRGEKIARHINS 464


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 79  PAYRPITLLSHVGKLFERLLLRRISPYIL 165
           P  + ITL+S  G+L  RLL   I P I+
Sbjct: 88  PTPQSITLISFPGELLMRLLKMFILPLIV 116



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 381 VVSGGQNLLCRGRGRTVFRAXHYGTAEHTLARCSG 485
           ++SG   L  +G GR  +RA  Y T    LA   G
Sbjct: 119 LISGMAQLDPKGSGRMGYRALLYYTVTTILAAIVG 153


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 101 CSRTWASCSSGC 136
           CSR W   S+GC
Sbjct: 21  CSRDWFRISAGC 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,334
Number of Sequences: 438
Number of extensions: 4310
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)