Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_A09
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.6  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/39 (20%), Positives = 19/39 (48%)
 Frame = +1

Query: 421 HTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 537
           H  +A ++HL +  +H ++++     A  +  +   H R
Sbjct: 186 HQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQPGMHPR 224


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +1

Query: 292 PPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKH- 468
           PPA    S   LP     T T  T+  A    T +T+ T            HL + H H 
Sbjct: 96  PPA----SSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQETLQRHHHLQNHHHHL 151

Query: 469 -ALHRKNLHPPAEPEHRRIARHER 537
            +   ++ H P + + ++  R ++
Sbjct: 152 QSTAVQDHHRPYQQQQQQQQRQQQ 175



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
 Frame = -3

Query: 269 HPVRENRADRLDGN----GGRPTGPPNDETTPPA 180
           +P   +  D + GN    G RP  PP   T+ PA
Sbjct: 72  YPAFSSSCDPVPGNLEQIGSRPLHPPASSTSLPA 105


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 475  HRKNLHPPAEPEHRRIARHERTGRLILQVTTTSDVSIFLP 594
            H + LH P +     ++R    G+  ++V   SD   F+P
Sbjct: 1482 HNEKLHIPKDKSVSVLSRENEAGQKEVKVLLGSDKIKFVP 1521


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 16/73 (21%), Positives = 22/73 (30%)
 Frame = +1

Query: 292 PPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHA 471
           PP+    S    P    +  T L  HH  Y    +T   R          +   S   + 
Sbjct: 130 PPSVSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENYN 189

Query: 472 LHRKNLHPPAEPE 510
              K  H   +PE
Sbjct: 190 WEHKETHIDWQPE 202


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 37  RTLNFLNQHSSFY 75
           RTLN LN H S Y
Sbjct: 412 RTLNSLNNHKSIY 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,229
Number of Sequences: 438
Number of extensions: 4685
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)