Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP18_FL5_A04
         (933 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   5.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   5.2  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    22   6.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   9.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   9.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 270 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 407
           A LH  +         W +  +I++NP+ +  V  KR   P+  ++
Sbjct: 825 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 870


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 270 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 407
           A LH  +         W +  +I++NP+ +  V  KR   P+  ++
Sbjct: 821 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 866


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 436  TPPPPFAQSRCSTSPYRGPRRS 501
            TP P  AQ       YRGP  S
Sbjct: 1339 TPVPRLAQDSSEDESYRGPSAS 1360


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 184 ISTIYPGLRRPIWR 225
           + T+YPG+R P +R
Sbjct: 108 LGTLYPGMRAPSFR 121


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 184 ISTIYPGLRRPIWR 225
           + T+YPG+R P +R
Sbjct: 108 LGTLYPGMRAPSFR 121


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 408 IPLPTRRVNNPAPAVRPITMFDQPIPXAPKVXY 506
           +PLP    N P P  RP   F    P  PK+ +
Sbjct: 21  VPLP----NVPQPGRRPFPTFPGQGPFNPKIKW 49


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 491 GPRYGLVEHRDWANGGG 441
           GPR GL+    W  GGG
Sbjct: 152 GPRNGLLPLLVWIYGGG 168


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 491 GPRYGLVEHRDWANGGG 441
           GPR GL+    W  GGG
Sbjct: 152 GPRNGLLPLLVWIYGGG 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,780
Number of Sequences: 438
Number of extensions: 4693
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)