Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_P18
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    66   7e-12
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    65   9e-12
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   0.70 
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    27   3.7  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 65.7 bits (153), Expect = 7e-12
 Identities = 32/52 (61%), Positives = 38/52 (73%)
 Frame = -3

Query: 638 LXKVSXVNIPGIALCNTDSPLRFVDIVIPCNTKFSHXIGLMWWLLAREVLRL 483
           + + S VNIP IALC+TDS L  VDI IP N K    IGL+W+LLAREVLR+
Sbjct: 136 IKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRV 187



 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = -1

Query: 481 RGVLPRDQRWDVVVDLXXYRDPEESEKDEQQAK 383
           RG L R   WDV+ DL  YRDPEE E++E+  K
Sbjct: 188 RGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 65.3 bits (152), Expect = 9e-12
 Identities = 32/52 (61%), Positives = 37/52 (71%)
 Frame = -3

Query: 638 LXKVSXVNIPGIALCNTDSPLRFVDIVIPCNTKFSHXIGLMWWLLAREVLRL 483
           + + S VNIP IALC+TDS L  VD+ IP N K    IGL W+LLAREVLRL
Sbjct: 137 IKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRL 188



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -1

Query: 481 RGVLPRDQRWDVVVDLXXYRDPEESEKDEQQ 389
           RG + R   W+V+ DL  YRDPEE E++E+Q
Sbjct: 189 RGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 605 IALCNTDSPLRFVDIVIPCNTKFSHXI 525
           + LC+ +S  RF D+ +  NTKF+H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 615 HSWDCFVQHRLPIKICGHCY 556
           HSWD  + H L +   GH Y
Sbjct: 193 HSWDALILHYLGVDHIGHLY 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,837
Number of Sequences: 5004
Number of extensions: 41050
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)