Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_P18
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 63 2e-10
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 63 2e-10
03_06_0680 - 35497868-35497884,35498058-35501961 30 1.7
02_04_0452 + 23044190-23045227 30 2.2
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 2.9
06_03_0979 + 26502221-26502493 29 5.2
02_05_0742 + 31415862-31417088 29 5.2
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 6.8
04_03_0606 + 17939606-17939704,17939836-17940094,17940256-179404... 28 9.0
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 28 9.0
02_03_0274 - 17183141-17183689 28 9.0
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = -3
Query: 641 PLXKVSXVNIPGIALCNTDSPLRFVDIVIPCNTKFSHXIGLMWWLLAREVLRL 483
P+ + + NIP IA C+TDSP+R+VDI IP N K IG ++WLLAR VL++
Sbjct: 137 PIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQM 189
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = -1
Query: 481 RGVLPRDQRWDVVVDLXXYRDPEESEKDEQQ 389
RG + +WDV+VDL YRDPEE+++ E++
Sbjct: 190 RGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 35.5 bits (78), Expect = 0.045
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -2
Query: 735 RLTPGVFINXIQVAXRELFFLIXLDXAQDHQPIXE 631
R TPG F N +Q + E LI D DHQPI E
Sbjct: 106 RHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKE 140
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 63.3 bits (147), Expect = 2e-10
Identities = 28/53 (52%), Positives = 39/53 (73%)
Frame = -3
Query: 641 PLXKVSXVNIPGIALCNTDSPLRFVDIVIPCNTKFSHXIGLMWWLLAREVLRL 483
P+ + + NIP IA C+TDSP+R+VDI IP N K + IG ++WLLAR VL++
Sbjct: 137 PIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQM 189
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = -1
Query: 481 RGVLPRDQRWDVVVDLXXYRDPEESEKDEQQAKEQ 377
RG + +WDV+VDL YRDPEE+++ E++A Q
Sbjct: 190 RGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
Score = 35.5 bits (78), Expect = 0.045
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -2
Query: 735 RLTPGVFINXIQVAXRELFFLIXLDXAQDHQPIXE 631
R TPG F N +Q + E LI D DHQPI E
Sbjct: 106 RHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKE 140
>03_06_0680 - 35497868-35497884,35498058-35501961
Length = 1306
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 593 NTDSPLRFVDIVIPCNTKFSHXIGLMWWLLAREVLRLS-WC 474
N +SPL +D+ CN FSH L W ++L L+ WC
Sbjct: 1013 NDNSPLELMDLD-GCNLLFSHPSALALWACFVQLLDLTIWC 1052
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 448 HPSAGHGEAHHESLSTSRANNHHIKP 525
H GHG AH S S SRA+N +P
Sbjct: 173 HAGHGHGHAHSHSHSHSRAHNPSTRP 198
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 269 TRCSSCFWSTPCSRRMVCPGTR*VEHN 189
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 269 TRCSSCFWSTPCSRRMVCPGTR 204
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0979 + 26502221-26502493
Length = 90
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 468 GSTPRKPQHFTCQQPPHQTNXVGKLGV 548
G TP +P QQPPH T G LG+
Sbjct: 7 GGTPVEPCGRLSQQPPHHTAYPGDLGL 33
>02_05_0742 + 31415862-31417088
Length = 408
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 418 GHGXXTNQPQHPSAGHGEAHHESLSTS 498
G G ++Q QH G G H+S+STS
Sbjct: 380 GGGGGSSQQQHGGGGGGGERHQSISTS 406
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 269 TRCSSCFWSTPCSRRMVCPGTR*VEHN 189
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>04_03_0606 +
17939606-17939704,17939836-17940094,17940256-17940424,
17940525-17940678,17942377-17942577,17946746-17946958,
17947103-17947375,17947481-17947678,17948340-17948609,
17949710-17949910,17950152-17950427
Length = 770
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -2
Query: 723 GVFINXIQVAXRELFFLIXLDXAQDHQPIXEGFIXQHSWDCFVQHRLPIKICGHCYPMQH 544
GV N ++A ++L+ L LD Q F + S VQH+ ++ G+C +H
Sbjct: 34 GVLTNGTEIAVKKLYDLRGLDDVQ--------FSNEFSNLMRVQHKNIVRFIGYCNEARH 85
Query: 543 QVFPLYWFDVV 511
++ + DV+
Sbjct: 86 ELMEVNGEDVL 96
>04_03_0199 -
12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 406 HFLQGHGXXTNQPQHPSAGHGEAHH---ESLSTSRANNHHIKPIXWENLVLHGITMSTNL 576
HF + + QH H A + +S +S AN H++ + ++N HG + +L
Sbjct: 483 HFFKSFQDAFREAQHLRLLHITAAYADLDSFLSSLANTTHLRYLRFKNKESHG---AFHL 539
Query: 577 NGESVLHKAIPGMLT 621
E V H+A+P L+
Sbjct: 540 LLERVTHEALPHALS 554
>02_03_0274 - 17183141-17183689
Length = 182
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 451 PSAGHGEAHHESLSTSRANNHHIKPIXWENLVLHGITMSTNLNGES 588
P+A G H L+T P N+ +H T +TN GES
Sbjct: 17 PTAHLGRHHASDLATPHPPTTPTSPSNTNNIHIHPFTRATNQFGES 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,921,931
Number of Sequences: 37544
Number of extensions: 289786
Number of successful extensions: 708
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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