Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_P15
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.025
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   2.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +3

Query: 477 PPXPPXPXRXXXXXXPXGGRGXSXPPXXPXPPXPXXKXXTXXPXPP 614
           PP PP P R      P G  G S     P PP P        P PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGN-GSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 31.9 bits (69), Expect = 0.10
 Identities = 18/50 (36%), Positives = 19/50 (38%)
 Frame = +3

Query: 468 SXXPPXPPXPXRXXXXXXPXGGRGXSXPPXXPXPPXPXXKXXTXXPXPPL 617
           S  PP PP P        P   +G S PP    PP P     T    PPL
Sbjct: 334 SSLPPPPPPPRSNAAGSIPLPPQGRSAPP----PPPPRSAPSTGRQPPPL 379



 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
 Frame = +3

Query: 477 PPXPPX--PXRXXXXXXPXGGRGXSXPPXXPXPP-XPXXKXXTXXPXPP 614
           PP PP   P R      P G    +  P  P PP  P     +  P  P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436



 Score = 23.8 bits (49), Expect(2) = 3.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 376 PPPPPPP 356
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 21.4 bits (43), Expect(2) = 3.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 373 PPPPPPXFFXXXSXGGGXPP 314
           PPPPPP      S G   PP
Sbjct: 361 PPPPPPR--SAPSTGRQPPP 378


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect(2) = 1.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 376 PPPPPPP 356
           PPPPPPP
Sbjct: 238 PPPPPPP 244



 Score = 22.6 bits (46), Expect(2) = 1.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 400 PPXFXXXXPPPPPP 359
           P  +    PPPPPP
Sbjct: 184 PSDYNPPPPPPPPP 197


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 376 PPPPPPPXFFXXXSXGGGXPP 314
           PPPPPPP  F   S     PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 400 PPXFXXXXPPPPPPP 356
           PP F     PPPPPP
Sbjct: 15  PPGFEPPSQPPPPPP 29


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect(2) = 2.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 376 PPPPPPP 356
           PPPPPPP
Sbjct: 947 PPPPPPP 953



 Score = 21.4 bits (43), Expect(2) = 2.7
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = -1

Query: 400 PPXFXXXXPPPPPP 359
           P       PPPPPP
Sbjct: 899 PTIITHPTPPPPPP 912


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 538 APPPPPXXXXLPXPKXXPXXPXPXXP 615
           +PPPPP    +P P   P    P  P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAP 756



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -1

Query: 400 PPXFXXXXPPPPPPPXFFXXXSXGGGXPP 314
           PP      PPPPPPP        G G PP
Sbjct: 753 PPAPIMGGPPPPPPP----PGVAGAGPPP 777



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 400 PPXFXXXXPPPPPPP 356
           PP      PPPPPPP
Sbjct: 767 PPGVAGAGPPPPPPP 781


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
 Frame = +1

Query: 535  AAPPPPPXXXXLPXPKXXPXXP--XPXXPXXP 624
            +AP PPP    +P P   P  P   P  P  P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.146    0.496 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,697
Number of Sequences: 5004
Number of extensions: 15555
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)