Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_P14
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729...    29   4.4  

>03_02_0308 -
           7297228-7298008,7298495-7298576,7298612-7298669,
           7298723-7298835,7298924-7299034,7299480-7299597,
           7299706-7299809,7300570-7300665,7301806-7302307
          Length = 654

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +1

Query: 280 WSEVTSIRE---VGDGAP--ERRGWRAAAXPSRDTXAPXXHXTPPXTPP 411
           W+ V  +++   VGD A   ++ GWR  A P      P    +PP  PP
Sbjct: 80  WAPVIHMQQFFPVGDVAYALQQAGWRRRAPPHHQQQGPGASPSPPPPPP 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,409,648
Number of Sequences: 37544
Number of extensions: 156565
Number of successful extensions: 463
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)