Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_P13
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555...    29   3.8  
05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464...    29   5.0  
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240...    28   6.6  
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188...    28   6.6  

>10_02_0127 +
           5555226-5555446,5555475-5555500,5555702-5555790,
           5558112-5558843
          Length = 355

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -2

Query: 207 RGDRCYRFFS*HVHHGSEGPDITQFDVGARNSL*TTSVPWRGVVLGRAASCCDLLRLSP 31
           RG R Y  +S  V H    PD    ++ +R SL +  + ++GV++ R    C  L  +P
Sbjct: 29  RGQRLYLLYS--VVH-CRAPDCEVLEISSRGSLGSPCLVYKGVIMIRERGYCHNLYSAP 84


>05_01_0538 +
           4646772-4647059,4647462-4647542,4647819-4647890,
           4648458-4649321
          Length = 434

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 42  STDRSTTLLYRAQHPARXRKSSTDYSEPRHRTELYPDLRSRD-ARVKKKTD-SIDLRD 209
           S DRS+    R+ H      SS DY  P H  +   D  SRD  R  +  D   D+RD
Sbjct: 255 SRDRSSRDYDRSSHDRDRDHSSRDYDRPSHDRDRDRDRSSRDYDRSSRDRDHDRDIRD 312


>07_03_1764 +
           29322683-29323387,29323809-29323889,29323968-29324072,
           29324453-29325382,29326728-29326856,29326953-29327042,
           29327237-29327293,29327362-29327394
          Length = 709

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 394 RPLGRVHEPNVRNCGSFRTEQYYYRNDKPSVG*NNLSHDGL 516
           R +  +H+ N+  CG F  E ++Y +D  +    NL  D L
Sbjct: 396 RLIQALHKENISLCGKFGAENFFYDDDN-NARIGNLMEDNL 435


>02_04_0460 -
           23118221-23118406,23118417-23118671,23118763-23118851,
           23119527-23119605,23121317-23121484,23121760-23122137
          Length = 384

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 550 CSPIKRERELGLDRRETGYFTLLMAC 473
           CSP +   +L ++  E  Y+TLL AC
Sbjct: 176 CSPAELPHKLQIELTENNYYTLLNAC 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,177,417
Number of Sequences: 37544
Number of extensions: 365254
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)