Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_P11
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.060
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 0.74
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.3
11_06_0610 - 25449085-25453284 29 3.0
03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132... 29 3.9
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 6.9
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 28 6.9
12_02_1174 - 26696869-26698191 28 9.1
05_01_0142 - 940421-940701,941262-941574 28 9.1
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.1 bits (77), Expect = 0.060
Identities = 22/69 (31%), Positives = 22/69 (31%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPPLFXX 513
PPPP K PP P PP P PPP GG G PP
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPP-PPPPPGGKKGGPPPPPPKG 384
Query: 512 GGGXPXXWP 486
G P P
Sbjct: 385 GASRPPAAP 393
Score = 31.5 bits (68), Expect = 0.74
Identities = 23/70 (32%), Positives = 23/70 (32%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPPLFXX 513
PPPP K PP P PP P PPP KG SPP
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPP-PPPPKGPPPPPPAKGPPPPP--PPKGPSPPPPPP 369
Query: 512 GGGXPXXWPP 483
GG PP
Sbjct: 370 PGGKKGGPPP 379
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 31.5 bits (68), Expect = 0.74
Identities = 21/71 (29%), Positives = 22/71 (30%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPPLFXX 513
PP P P P +PP G P PPP G G PP
Sbjct: 335 PPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPP----PPPGAAGRGGGGPPPPALP 390
Query: 512 GGGXPXXWPPF 480
GG PPF
Sbjct: 391 GGPRARGPPPF 401
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/85 (27%), Positives = 24/85 (28%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPPLFXX 513
PPPP PP PP P PP G G PP
Sbjct: 322 PPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPP----GPGPGPPPPPGAA 377
Query: 512 GGGXPXXWPPFXFFXKKXXGPPXXK 438
G G PP + GPP K
Sbjct: 378 GRGGGGPPPPALPGGPRARGPPPFK 402
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPPLFXX 513
PPPP PP G PP G G PPP G + PP F
Sbjct: 350 PPPPPPAAPAAPRPPGPGP------GPPPPPGAAGRGGGGPPPPALPGGPRARGPPPFKK 403
Query: 512 GGG 504
G
Sbjct: 404 SPG 406
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/61 (29%), Positives = 19/61 (31%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPPLFXX 513
PPPP PP + P G PP G PP G PPL
Sbjct: 751 PPPPLMTGKKAPAPPPPPPQAPKPPGTVPPPPPLHGASGRPHPPSSKGLNAPAPPPLLGR 810
Query: 512 G 510
G
Sbjct: 811 G 811
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Frame = -3
Query: 689 PPPXXKKXFXXXPPXXXXKXXXPXGXKPP-----XFXXGXPXGXFPPPXXGGXXKGVSPP 525
PPP + PP P G PP P G P P G G SPP
Sbjct: 529 PPPQAEPPTEYSPPATPESSPPPEGKSPPTPTASHSPPPVPEGHTPSPPKSGPPAGESPP 588
>03_01_0164 -
1326002-1326409,1326410-1326428,1326523-1326647,
1327482-1327530,1328834-1328855,1328969-1329071
Length = 241
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = -3
Query: 623 PXGXKPPXFXXGXPXGXFPP-PXXGGXXKGVSPPLFXXGGG---XPXXWPPFXFFXKKXX 456
P G P G P G +PP P G PP GG P +PP + +
Sbjct: 172 PVGYTPQQPAYGQPYGGYPPAPPAQGYPPAAYPPAGYPQGGAYPPPGSYPPPGSYPPQGS 231
Query: 455 GPP 447
PP
Sbjct: 232 YPP 234
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.3 bits (60), Expect = 6.9
Identities = 22/70 (31%), Positives = 24/70 (34%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPPLFXX 513
PPPP PP G PP G G PP G +G +PP
Sbjct: 1123 PPPPIGGLGGHQAPPAPPLPEGI--GGVPPPPPVGGLGGPPAPPPPAG-FRGGTPPPNAH 1179
Query: 512 GGGXPXXWPP 483
GG P PP
Sbjct: 1180 GGVAPPPPPP 1189
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/56 (30%), Positives = 19/56 (33%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPP 525
PP P + PP P PP G P PPP GG +PP
Sbjct: 1086 PPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVP----PPPPIGGLGGHQAPP 1137
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSP 528
PPPP P P PP G P PPP GG +P
Sbjct: 282 PPPPNAPMGMPPRIPPPPVGGTQPP-PPPPPLANGPPRSIPPPPMTGGAMANFTP 335
>12_02_1174 - 26696869-26698191
Length = 440
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/70 (27%), Positives = 22/70 (31%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPPLFXX 513
PPPP + PP K P +PP PPP V PP+
Sbjct: 159 PPPPPPPRPPSVKPPVVQPKPQPPPSLQPPS----------PPPPPPTRPPSVKPPVVQP 208
Query: 512 GGGXPXXWPP 483
P PP
Sbjct: 209 KPQPPPTLPP 218
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = -3
Query: 623 PXGXKPPXFXXGXPXGXFPPPXXG-GXXKGVSPPLFXXGGGXPXXWPPFXFFXKKXXGPP 447
P G PP P G +PPP G PP G P +PP + + PP
Sbjct: 37 PQGYPPPPGAYPPPPGAYPPPPGAYPPPPGAYPP--QHGYPQPGGYPPPGGYPQHGGYPP 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,710
Number of Sequences: 37544
Number of extensions: 269179
Number of successful extensions: 336
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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