Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_P11
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 45 5e-05
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 38 0.010
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 38 0.010
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.030
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.030
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 31 1.1
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 31 1.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.5
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 45.2 bits (102), Expect = 5e-05
Identities = 29/86 (33%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Frame = -3
Query: 692 PPPPXXKKXFXXXP---PXXXXKXXXPXGXKPPXFXXGX-PXGXFPPPXXGGXXKGVSPP 525
PPPP P P + G PP F G P FPPP GG PP
Sbjct: 726 PPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGPMSSFPPPPRGGMHHMPPPP 785
Query: 524 LFXXGGGXPXXWPPFXFFXKKXXGPP 447
F G G PP F + GPP
Sbjct: 786 SFRGGRGGHGGPPPPHFDRRGGGGPP 811
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/69 (30%), Positives = 23/69 (33%)
Frame = -3
Query: 689 PPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPPLFXXG 510
PPP + PP P G P F P PP G G PP F G
Sbjct: 707 PPPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPP---PPMFQQGFNAGAPPPPFGRG 763
Query: 509 GGXPXXWPP 483
G +PP
Sbjct: 764 AGPMSSFPP 772
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 37.5 bits (83), Expect = 0.010
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPX-FXXGXPXGXFPPPXXGGXXKGVSPPLFX 516
PPPP + F PP + P PP F G P G PPP P+
Sbjct: 297 PPPP--RGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPH----------PMMF 344
Query: 515 XGGGXPXXWPPFXFFXKKXXGPPXXKNPL 429
GG P +PP + PP P+
Sbjct: 345 RGGPYPPFFPPPPPHFMRPSSPPTDGGPI 373
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Frame = -3
Query: 623 PXGXKPPXFXX--GXPXGXFPPPXXGGXXKGVSPPLF----XXGGGXPXXW--PPFXFFX 468
P PP F P G FPPP +G+ PP G G P + PP
Sbjct: 285 PYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMF 344
Query: 467 KKXXGPPXXKNP 432
+ PP P
Sbjct: 345 RGGPYPPFFPPP 356
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 37.5 bits (83), Expect = 0.010
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPX-FXXGXPXGXFPPPXXGGXXKGVSPPLFX 516
PPPP + F PP + P PP F G P G PPP P+
Sbjct: 297 PPPP--RGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPH----------PMMF 344
Query: 515 XGGGXPXXWPPFXFFXKKXXGPPXXKNPL 429
GG P +PP + PP P+
Sbjct: 345 RGGPYPPFFPPPPPHFMRPSSPPTDGGPI 373
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Frame = -3
Query: 623 PXGXKPPXFXX--GXPXGXFPPPXXGGXXKGVSPPLF----XXGGGXPXXW--PPFXFFX 468
P PP F P G FPPP +G+ PP G G P + PP
Sbjct: 285 PYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMF 344
Query: 467 KKXXGPPXXKNP 432
+ PP P
Sbjct: 345 RGGPYPPFFPPP 356
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.9 bits (79), Expect = 0.030
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPPLFXX 513
PPPP + PP + P G P P F PP GG P +
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGM--PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 344
Query: 512 GGGXPXXWPPFXFFXKKXXGPPXXKNP 432
GG P P + PP P
Sbjct: 345 GGMPPPPPPRYPSAGPGMYPPPPPSRP 371
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.9 bits (79), Expect = 0.030
Identities = 23/87 (26%), Positives = 27/87 (31%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPPPXXGGXXKGVSPPLFXX 513
PPPP + PP + P G P P F PP GG P +
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGM--PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYP 354
Query: 512 GGGXPXXWPPFXFFXKKXXGPPXXKNP 432
GG P P + PP P
Sbjct: 355 GGMPPPPPPRYPSAGPGMYPPPPPSRP 381
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPP-----PXXGGXXKGVSP 528
P PP ++ PP P G +PP G G +PP P GG ++P
Sbjct: 771 PAPPGGRQA--PMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAP 828
Query: 527 P 525
P
Sbjct: 829 P 829
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 13/82 (15%)
Frame = -3
Query: 689 PPPXXKKXFXXXP----PXXXXKXXXPXGXKPPXFXXGXPX-----GXFPPPXXGGXXKG 537
PPP + P P P G + P G P G PPP G G
Sbjct: 748 PPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
Query: 536 VSPPLF----XXGGGXPXXWPP 483
+ PPL GG P PP
Sbjct: 808 MYPPLIPTRPGPGGPPPNMAPP 829
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPXGXKPPXFXXGXPXGXFPP-----PXXGGXXKGVSP 528
P PP ++ PP P G +PP G G +PP P GG ++P
Sbjct: 771 PAPPGGRQA--PMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPPNMAP 828
Query: 527 P 525
P
Sbjct: 829 P 829
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 13/82 (15%)
Frame = -3
Query: 689 PPPXXKKXFXXXP----PXXXXKXXXPXGXKPPXFXXGXPX-----GXFPPPXXGGXXKG 537
PPP + P P P G + P G P G PPP G G
Sbjct: 748 PPPLPMSDYRPHPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGG 807
Query: 536 VSPPLF----XXGGGXPXXWPP 483
+ PPL GG P PP
Sbjct: 808 MYPPLIPTRPGPGGPPPNMAPP 829
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/80 (32%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPX--GXKPPXFXXGXPX---GXFPPPXXGGXXKGVSP 528
PPPP PP P G PP G P G PPP G P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 527 PLFXXG--GGXPXXWPPFXF 474
P G GG P PP F
Sbjct: 774 PPPPGGFKGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/80 (32%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPX--GXKPPXFXXGXPX---GXFPPPXXGGXXKGVSP 528
PPPP PP P G PP G P G PPP G P
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 773
Query: 527 PLFXXG--GGXPXXWPPFXF 474
P G GG P PP F
Sbjct: 774 PPPPGGFKGGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/80 (32%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Frame = -3
Query: 692 PPPPXXKKXFXXXPPXXXXKXXXPX--GXKPPXFXXGXPX---GXFPPPXXGGXXKGVSP 528
PPPP PP P G PP G P G PPP G P
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP 356
Query: 527 PLFXXG--GGXPXXWPPFXF 474
P G GG P PP F
Sbjct: 357 PPPPGGFKGGPPPPPPPGMF 376
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,942,229
Number of Sequences: 27780
Number of extensions: 199266
Number of successful extensions: 282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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