Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_P03
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.33
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 31 1.0
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.3
07_03_0846 - 21983581-21986055 29 3.1
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 29 4.1
02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885 28 7.2
01_06_0695 - 31292622-31293317 28 7.2
08_02_1485 - 27466761-27467753 28 9.5
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 9.5
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.5
03_05_0751 - 27389910-27392105 28 9.5
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 95 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 223
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 31.1 bits (67), Expect = 1.0
Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 4/145 (2%)
Frame = +2
Query: 47 PGAGLSLNR--SQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 220
P AG+ SQ + LPS T RQ++ S S TE P A +K S
Sbjct: 266 PSAGMISTSFSSQREQPLPSETIRQDKPSPRKESNFFTTTEKTPSTPRSRAPTTQKQPSS 325
Query: 221 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 400
P+ + R + + K + S T S D + L+ +A H
Sbjct: 326 TFFTPSTTPKIPQRTDTDISSSKDAPYQTKPS--ETTSKEAHDKSHLSGFFKARSHTDET 383
Query: 401 GSFT--PPAARSSA*TKCPKLRFLS 469
+ T P S TK PK R +S
Sbjct: 384 ATPTKHSPQEDSKTSTKIPKTRDIS 408
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 363 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 229
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 221 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 370
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 29.1 bits (62), Expect = 4.1
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Frame = +2
Query: 98 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGLRR--RVSR-F 265
S +PR+ R YS R R+ RD+R ++++ S D R P G R R R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPRDSRSPRGS 202
Query: 266 ECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFTPPAARSS 433
++R K + RGS P R AS +P + PA R S
Sbjct: 203 PRDSRSPKGSPRDTQSPRGSPRDSRSP--RRSASPPNGRNRSPTPNASRSPAPRDS 256
>02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885
Length = 466
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 302 EPPDSRGSTVSISLPDSARLASALEAFRHNPADGSFTPPAARS 430
+PP G S+ P SA L S+L A + P + PP + S
Sbjct: 31 KPPSGGGIFSSLPQPKSALLFSSLPAPKSGPVFSAIPPPKSSS 73
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 47 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 181
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 305 PPDSRGSTVSISLPDSARLASALEAFRHNPADGSFTPPAAR 427
PP + G +S +P A LA++L + NPA PP ++
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPASPP-PPPTSK 78
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 41 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 220
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 221 D 223
+
Sbjct: 791 E 791
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 372 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 199
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 198 TRASR 184
TRA+R
Sbjct: 64 TRAAR 68
>03_05_0751 - 27389910-27392105
Length = 731
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -3
Query: 432 LDRAAGGV-KLPSAG--LCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTS 280
+D AGGV K AG + LN SKAE + + ++ E SKQ F S
Sbjct: 242 IDLEAGGVAKRQEAGKAISLNVSKAEVLKVKKNRQSEDLDVMEGRNSKQSAFCS 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,750,291
Number of Sequences: 37544
Number of extensions: 486387
Number of successful extensions: 1382
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -