Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_O18
         (987 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.0  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    29   1.0  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.1  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   5.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   5.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 836 PPPPPPPXXXXKKKKK 883
           PPPPPPP    K+K K
Sbjct: 24  PPPPPPPGYVKKRKNK 39



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = +3

Query: 834 PP--PPPPPPXXXXKKKKKK 887
           PP  PPPPPP    KK+K K
Sbjct: 20  PPSQPPPPPPPGYVKKRKNK 39



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 834 PPPPPPPP 857
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 834 PPPPPPPPXXXXKKKKKKK 890
           P  PPPPP     KK+K K
Sbjct: 21  PSQPPPPPPPGYVKKRKNK 39


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 834  PPPPPPPPXXXXKK 875
            PPPPPPPP    KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 836  PPPPPPPXXXXKKK 877
            PPPPPPP    +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 834 PPPPPPPPXXXXKKKKKK 887
           PPPPPPPP       K +
Sbjct: 370 PPPPPPPPELLNHSPKSR 387


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 834 PPPPPPPP 857
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 834 PPPPPPPP 857
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 834 PPPPPPPP 857
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 834 PPPPPPPP 857
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 834 PPPPPPPP 857
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 834 PPPPPPPP 857
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 834 PPPPPPPP 857
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 834 PPPPPPPP 857
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 834 PPPPPPPP 857
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,835
Number of Sequences: 5004
Number of extensions: 15285
Number of successful extensions: 301
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)