Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_O16
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   1.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   1.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   1.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -1

Query: 519 GGPCSACTTWSGGGPSPPATCVTLCTRPATRSTHTCSTCWRTDTAPP 379
           GGP +  TT    GP+   TC      P T +T    T       PP
Sbjct: 411 GGPPTGATT----GPNEIVTCTNCGPNPCTHTTTNGCTAELRKKEPP 453


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -1

Query: 519 GGPCSACTTWSGGGPSPPATCVTLCTRPATRSTHTCSTCWRTDTAPP 379
           GGP +  TT    GP+   TC      P T +T    T       PP
Sbjct: 397 GGPPTGATT----GPNEIVTCTNCGPNPCTHTTTNGCTAELRKKEPP 439


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -1

Query: 519 GGPCSACTTWSGGGPSPPATCVTLCTRPATRSTHTCSTCWRTDTAPP 379
           GGP +  TT    GP+   TC      P T +T    T       PP
Sbjct: 431 GGPPTGATT----GPNEIVTCTNCGPNPCTHTTTNGCTAELRKKEPP 473


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -1

Query: 519 GGPCSACTTWSGGGPSPPATCVTLCTRPATRSTHTCSTCWRTDTAPP 379
           GGP +  TT    GP+   TC      P T +T    T       PP
Sbjct: 380 GGPPTGATT----GPNEIVTCTNCGPNPCTHTTTNGCTAELRKKEPP 422


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 554 FEASPPEPSCQASRSCYGXRPW 619
           F+A   E +C A   CY  R W
Sbjct: 752 FDACDCEMTCPAGCKCYNDRTW 773


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 144  EPNPSLTSTGLHAGSRLHY 88
            +P P+  S G+  G +LHY
Sbjct: 1133 QPPPNTHSNGIIQGYKLHY 1151


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 144  EPNPSLTSTGLHAGSRLHY 88
            +P P+  S G+  G +LHY
Sbjct: 1129 QPPPNTHSNGIIQGYKLHY 1147


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 482 PPLHVVQAEHGPPVAQI 532
           PPLH  QAE    + QI
Sbjct: 249 PPLHADQAEEYKKIQQI 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,383
Number of Sequences: 438
Number of extensions: 4408
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)