Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_O13
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 57 2e-08
09_01_0014 + 357398-357583,360213-360323,360520-360676,361067-36... 48 8e-06
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734... 36 0.026
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 36 0.026
01_05_0146 + 18591235-18591345,18591662-18591830,18592282-185923... 36 0.034
05_04_0019 + 17197271-17197445,17197937-17198067,17198129-171981... 32 0.42
03_04_0062 + 16965323-16966024 30 2.3
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 29 3.0
03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880... 29 3.9
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 29 5.2
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 6.9
05_05_0055 + 21977546-21978061,21978144-21978162,21978168-219784... 28 9.1
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 56.8 bits (131), Expect = 2e-08
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Frame = -2
Query: 501 GLNKFNSVVAHPGS---MSNETTRVLFGHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQ- 334
G++ +N + A G + N + +V H P T+ NM Q + K++YG+
Sbjct: 314 GIDCYNLMSAFTGDNCCLDNSSVQVFLAHEPQATATKNMIHLAQMIRGGTIAKYDYGNAG 373
Query: 333 KNLELYGTSEPPEYNISAVSP--PVVVIYGENDGLVDTKDVEWAMERL 196
N E YG + PP Y+++A+ P+ + YG D L D +DV + L
Sbjct: 374 DNREHYGQATPPAYDVTAIPGDFPLFLSYGGRDSLSDVQDVSRLLRAL 421
>09_01_0014 +
357398-357583,360213-360323,360520-360676,361067-361233,
362012-362122,362206-362349,362436-362476,364134-364174,
364175-364261,365402-365724
Length = 455
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = -2
Query: 360 FVKFNYGHQKNLELYGTSEPPEYNISAV--SPPVVVIYGENDGLVDTKDVEWAMERLPNV 187
F K++YG NL YG PP +++S++ S P+ + YG D L D DV+ + L +
Sbjct: 355 FAKYDYGLLGNLRRYGHLRPPAFDLSSIPESLPIWMGYGGLDALADVTDVQRTIRELGST 414
Query: 186 LEAVLIKDPAWNHMSVTYSSRVGEIIFPKINEYLQ 82
E + I D + H+ S + + ++ + +L+
Sbjct: 415 PELLYIGD--YGHIDFVMSVKAKDDVYVDLIRFLR 447
>08_02_1358 -
26372559-26372887,26373183-26373262,26373287-26373420,
26373546-26373689,26373809-26373919,26374165-26374305,
26376839-26376964,26377072-26377263
Length = 418
Score = 36.3 bits (80), Expect = 0.026
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = -2
Query: 414 GTSLHNMAKYGQAMTNDKFVKFNYGH-QKNLELYGTSEPPEYNISAVSP--PVVVIYGEN 244
G + +++ A+ + K++Y N+ YG ++PP Y+++A+ P+ + YG
Sbjct: 298 GMNCYDLLTSFTAVRDGVLTKYDYVMPDANVARYGQADPPAYDMAAIPAWFPIFLSYGGR 357
Query: 243 DGLVDTKDVEWAMERL 196
D L D DV ++ L
Sbjct: 358 DSLSDPADVALLLDDL 373
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 36.3 bits (80), Expect = 0.026
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Frame = -2
Query: 354 KFNYGHQK-NLELYGTSEPPEYNISAV--SPPVVVIYGENDGLVDTKDVEWAMERL---P 193
+F+YG+ K N++ Y PP YN+S++ P+ + +G D L D D + L
Sbjct: 275 RFDYGNAKDNMKHYNQPRPPPYNLSSIPNHVPIFLTHGGEDYLGDVPDTRHLLRTLVKKH 334
Query: 192 NVLEAVLIKDPAWNHMSVTYSSRVGEIIFPKINEYLQ 82
N +I P + H + E+I+ + ++ +
Sbjct: 335 NSDSIEVIYVPDYAHADFIMAYNAPELIYGPMVDFFK 371
>01_05_0146 +
18591235-18591345,18591662-18591830,18592282-18592334,
18592369-18592487,18592618-18593698
Length = 510
Score = 35.9 bits (79), Expect = 0.034
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = -2
Query: 414 GTSLHNMAKYGQAMTNDKFVKFNYGHQ-KNLELYGTSEPPEY--NISAVSPPVVVIYGEN 244
G S H Q +F ++YG N+E YGT EP + + + PV ++ G+
Sbjct: 345 GVSFHVALHLAQIKRAKRFQMYDYGSPVANMEAYGTPEPLDLGAHYGLIDIPVDLVAGQR 404
Query: 243 DGLVDTKDVEWAMERLPNVLEAVLIKDPAWNHMSVTYSSR 124
D ++ V+ + + V + + H+ T+S R
Sbjct: 405 DRVISPSMVKKHYKLMRKAGVEVSYNEFEYAHLDFTFSHR 444
>05_04_0019 +
17197271-17197445,17197937-17198067,17198129-17198164,
17198196-17198333,17198503-17198601,17198750-17199124
Length = 317
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/81 (24%), Positives = 37/81 (45%)
Frame = -2
Query: 327 LELYGTSEPPEYNISAVSPPVVVIYGENDGLVDTKDVEWAMERLPNVLEAVLIKDPAWNH 148
LEL TS E ++S VS P +++GE D + D + ER + + + + W+
Sbjct: 178 LELLRTSISVEQSLSQVSIPFFILHGEADKVTDPEVSRALYERAASADKTIKLYPGMWHG 237
Query: 147 MSVTYSSRVGEIIFPKINEYL 85
++ ++F I +L
Sbjct: 238 LTAGEPDHNVHLVFSDIVAWL 258
>03_04_0062 + 16965323-16966024
Length = 233
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 222 PWCPLIRHSPRKLPR-LGVIQPICYTLAAPR 311
P C H+ +PR LG I P+CYT R
Sbjct: 202 PMCAANSHARTPIPRHLGAITPVCYTFVLDR 232
>12_02_0803 + 23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 514 SLRELSEVTKEGHKLLA*STLGKNSCKPAVVNSVSQPC 627
S R + V K K L T+G S PA++NSV + C
Sbjct: 1447 SRRFMKNVKKHRLKRLIDETIGPTSANPALINSVLEVC 1484
>03_05_0064 -
20385290-20385346,20385452-20387133,20387266-20388083,
20388184-20388303,20389036-20389305,20390094-20390269
Length = 1040
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = -2
Query: 537 HFTKFTEGLCDAGLNKFNSVVAHPGSMSNETTRVLFGHFPAGTSLHNMAKYGQAMTNDKF 358
HF+ + + + KF + H G+ S + + H G + H + G+A T+ F
Sbjct: 250 HFSAIDKARHRSYMEKFQTCKKHQGTCSKDLMFNISDHSLVGRTCHRF-EVGRAHTSKAF 308
Query: 357 VKFNYGHQKNL 325
+F+ H + L
Sbjct: 309 DEFHAFHHEQL 319
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 453 NETTRVLFGHFPAGTSLHNMAKYGQAMTNDKFVKFNYGHQKNLEL 319
NE+ R+ G +P+ T LH + Y Q T + V N G +NL +
Sbjct: 463 NESMRMSLGSWPSLTKLHISSSYNQMATLE--VDTNQGPLENLRI 505
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 331 LLMSVVELHKFVICHCLSVLCHVVQRCSSREMSKEHSCRFV*HRSRVSNDRVKL 492
+++ V+ ++C CL+ +C S+E+ K+H + + S + ND ++L
Sbjct: 1908 IVLPVITSLLILMCICLAWICKSRGIHRSKEIQKKHRLQHLKDSSELENDNLEL 1961
>05_05_0055 +
21977546-21978061,21978144-21978162,21978168-21978486,
21978779-21978799,21980780-21980857,21981116-21981359
Length = 398
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 310 GSVQF*ILLMSVVELHKFVICHCLSVLCHVVQRCSSREMSKE 435
G +Q + VEL KF CL L H+VQ C E K+
Sbjct: 243 GLMQTTVFAAPNVELDKFAAL-CLIFLAHIVQVCFKEETDKK 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,921,655
Number of Sequences: 37544
Number of extensions: 419445
Number of successful extensions: 1007
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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