Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_O09
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    31   0.17 
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    29   0.92 
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    28   1.2  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    28   1.6  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    26   4.9  
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    26   6.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.5  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    26   6.5  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   8.6  

>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 454 LLDDAEGLAHLLDATQVPIVAVAVRPYGHV 543
           LL   +G  HL    QVPI+ +A++ YGH+
Sbjct: 192 LLPLKKGAFHLAVQAQVPIIPIAIQTYGHL 221


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = -3

Query: 481 APVPPHH-RAVPQRHAPRGGQDRRRQAHPA----LPGGDEDVHGGADPPLQAVHAGLPGA 317
           AP+PP H  AVP   A     D + + HP+          D  G +  P  A  AG P  
Sbjct: 266 APIPPLHVPAVPLTSASHSSSDGKSRKHPSPYKPYLNSSHDTLGSSTRPSSADTAGSPAT 325

Query: 316 A 314
           +
Sbjct: 326 S 326


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 82  VYCFNVLPVDLPEDH 126
           ++C  +LP DLP DH
Sbjct: 140 IFCLRILPADLPNDH 154


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = +2

Query: 83  STASTFYRSISPKTTSRVPMMATMSASMEFLPIFSS----AARCAKPGALI 223
           +++S F+R +SPK+ + + + A++     F  IFS+    + +C  P +L+
Sbjct: 18  ASSSRFWRVLSPKSRTGIALYASLILLCIFFTIFSTMSHPSLQCFSPTSLV 68


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 332 CVNSLKWWISASMDVFISSREGGV 403
           C+N +   I+AS +VF   R+GG+
Sbjct: 348 CLNCISLLIAASREVFAFCRDGGI 371


>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 303 YTAVEAPKGEFGIYLVSDGGPKPYR 229
           Y  V  P+GEF +    + GP+P++
Sbjct: 119 YEGVTEPEGEFELTEAIEDGPRPFK 143


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 487 GDAPVPPHHRAVPQRHAPRGGQDRRRQAHP 398
           G  P+PP  R+ P    PR      RQ  P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 303 YTAVEAPKGEFGIYLVSDGGPKPYR 229
           Y  V  P+GEF +    + GP+P++
Sbjct: 119 YEGVTEPEGEFELTEAIEDGPRPFK 143


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = +2

Query: 50  NLFLKHKNVHVSTASTFYRSISPKTTSRVPMMATMSASMEFLPIFSSAAR 199
           ++F + K + VS     +++++ +TT+   +  +++     LP FSS A+
Sbjct: 205 HVFPQLKQIQVSDLEASFQNVTSRTTTGGHISNSLNTQEVVLPSFSSNAK 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,084
Number of Sequences: 5004
Number of extensions: 43055
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)