Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_O09
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-9|AAC77506.1| 474|Caenorhabditis elegans Temporarily ass... 303 8e-83
Z79601-2|CAB01886.1| 482|Caenorhabditis elegans Hypothetical pr... 302 2e-82
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 34 0.093
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 33 0.21
U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical pr... 31 0.86
U41011-1|AAA82285.2| 166|Caenorhabditis elegans Hypothetical pr... 26 1.2
U41011-2|AAM98042.1| 163|Caenorhabditis elegans Hypothetical pr... 26 1.2
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 30 2.0
Z71180-7|CAK55177.1| 647|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z71180-6|CAI79160.1| 702|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z71180-5|CAD44114.1| 363|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z71180-4|CAA94893.2| 723|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL021475-8|CAK55192.1| 647|Caenorhabditis elegans Hypothetical ... 29 3.5
AL021475-7|CAI79248.1| 702|Caenorhabditis elegans Hypothetical ... 29 3.5
AL021475-6|CAD44157.1| 363|Caenorhabditis elegans Hypothetical ... 29 3.5
AL021475-5|CAA16314.2| 723|Caenorhabditis elegans Hypothetical ... 29 3.5
AF178536-1|AAD56365.1| 723|Caenorhabditis elegans EGL-9 protein. 29 3.5
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 29 3.5
Z99169-1|CAB16306.2| 966|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 29 4.6
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 29 4.6
AB055112-1|BAB62293.1| 966|Caenorhabditis elegans VHA-7 protein. 29 4.6
AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical... 28 6.1
U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protei... 28 8.0
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 28 8.0
>U00043-9|AAC77506.1| 474|Caenorhabditis elegans Temporarily
assigned gene nameprotein 99 protein.
Length = 474
Score = 303 bits (744), Expect = 8e-83
Identities = 132/186 (70%), Positives = 159/186 (85%)
Frame = -1
Query: 660 VTAQDAFNYGFXGVMLRGSGIKWDLRKTQPYDAYPFVEFDVPIGTHGDCYDRYLCRVEEM 481
V+A DA N+GF GVM+RGSGIK D+RKT+PYDAY +EFDVPIGT GDCYDRYLCRVEEM
Sbjct: 289 VSASDALNWGFSGVMVRGSGIKQDVRKTEPYDAYADMEFDVPIGTKGDCYDRYLCRVEEM 348
Query: 480 RQSLRIIEQCLNDMPPGEVKTDDAKLTPPSREEMKTSMEALIHHFKLFTQGYQVPPGSTY 301
RQSL I+ QCLN MP GE+K+DD K+ PP R EMK +ME+LIHHFK FT+G+QVPPG+TY
Sbjct: 349 RQSLNIVHQCLNKMPTGEIKSDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATY 408
Query: 300 TAVEAPKGEFGIYLVSDGGPKPYRCKIKAPGFAHLAALEKIGRNSMLADIVAIIGTLDVV 121
+EAPKGEFG+YLV+DG KPYRC I+APGFAHLAA+ + S++ADIVA+IGT+D+V
Sbjct: 409 VPIEAPKGEFGVYLVADGTGKPYRCFIRAPGFAHLAAIHDVCYMSLIADIVAVIGTMDIV 468
Query: 120 FGEIDR 103
FGE+DR
Sbjct: 469 FGEVDR 474
>Z79601-2|CAB01886.1| 482|Caenorhabditis elegans Hypothetical
protein K09A9.5 protein.
Length = 482
Score = 302 bits (741), Expect = 2e-82
Identities = 131/186 (70%), Positives = 158/186 (84%)
Frame = -1
Query: 660 VTAQDAFNYGFXGVMLRGSGIKWDLRKTQPYDAYPFVEFDVPIGTHGDCYDRYLCRVEEM 481
V+A DA N+GF GVM+RGSGIK D+RKT+PYDAY +EFDVPIGT GDCYDRYLCR+EEM
Sbjct: 297 VSAADALNWGFSGVMVRGSGIKQDVRKTEPYDAYADMEFDVPIGTKGDCYDRYLCRIEEM 356
Query: 480 RQSLRIIEQCLNDMPPGEVKTDDAKLTPPSREEMKTSMEALIHHFKLFTQGYQVPPGSTY 301
RQSL I+ QCLN MP GE+K DD K+ PP R EMK +ME+LIHHFK FT+G+QVPPG+TY
Sbjct: 357 RQSLNIVHQCLNKMPAGEIKVDDHKVVPPKRAEMKENMESLIHHFKFFTEGFQVPPGATY 416
Query: 300 TAVEAPKGEFGIYLVSDGGPKPYRCKIKAPGFAHLAALEKIGRNSMLADIVAIIGTLDVV 121
+EAPKGEFG+YLV+DG KPYRC I+APGFAHLAA+ + S++ADIVA+IGT+D+V
Sbjct: 417 VPIEAPKGEFGVYLVADGTGKPYRCFIRAPGFAHLAAIHDVCYMSLIADIVAVIGTMDIV 476
Query: 120 FGEIDR 103
FGE+DR
Sbjct: 477 FGEVDR 482
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 737 FPERIXEVEDVLPPNRXGAADQ-DIGV 660
FPERI E+ED+L NR A DIG+
Sbjct: 270 FPERIDELEDMLTENRIWKARTIDIGL 296
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 34.3 bits (75), Expect = 0.093
Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 487 GDAPVPPHHRAVPQRHAP-RGGQDRRRQAHPALPGGDEDVHGGADPPLQAVHAGLPGAAG 311
GDA P A AP +GGQ R PA G + GG P Q+ AG PG AG
Sbjct: 173 GDAGAPGQAGAPGHPGAPGQGGQRSRGTPGPAGAPGPQGPAGGPGQPGQSGGAGAPGPAG 232
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/68 (30%), Positives = 24/68 (35%)
Frame = -3
Query: 481 APVPPHHRAVPQRHAPRGGQDRRRQAHPALPGGDEDVHGGADPPLQAVHAGLPGAAGLHL 302
AP P P P G + P G + G A P QA G PGA G
Sbjct: 135 APGPAGAPGAPGPQGPSGAPGQDAVGEGPGPAGPQGPAGDAGAPGQAGAPGHPGAPGQGG 194
Query: 301 HRRGGSQG 278
R G+ G
Sbjct: 195 QRSRGTPG 202
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -3
Query: 478 PVPPHHRAVPQRHAPRGGQDRRRQAHPALPG--GDEDVHGGADPPLQAVHAGLPGAAG 311
P PP + R PRG Q R + PALPG G G + P AG PG+ G
Sbjct: 185 PGPPGNNGEGGRDGPRGEQGRPAISTPALPGDPGAPGEPGPSGLPGDQGQAGRPGSDG 242
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 487 GDAPVPPHHRAVPQRHAP-RGGQDRRRQAHPALPGGDEDVHGGADPPLQAVHAGLPGAAG 311
GDA P A AP +GGQ R P+ G + GG P Q+ AG PG AG
Sbjct: 173 GDAGAPGQAGAPGHPGAPGQGGQRSRGTPGPSGAPGPQGPAGGPGQPGQSGGAGAPGPAG 232
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/68 (30%), Positives = 24/68 (35%)
Frame = -3
Query: 481 APVPPHHRAVPQRHAPRGGQDRRRQAHPALPGGDEDVHGGADPPLQAVHAGLPGAAGLHL 302
AP P P P G + P G + G A P QA G PGA G
Sbjct: 135 APGPAGAPGAPGPQGPSGAPGQDAVGGGPGPAGPQGPAGDAGAPGQAGAPGHPGAPGQGG 194
Query: 301 HRRGGSQG 278
R G+ G
Sbjct: 195 QRSRGTPG 202
>U80447-7|AAB37811.1| 518|Caenorhabditis elegans Hypothetical
protein F55F8.7 protein.
Length = 518
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -1
Query: 447 NDMPPGEVKTDDAKLTPPSREEMKTSMEALIHHFKLFTQGYQVPPGSTYTAVEA 286
N+ PP E +D K+ +MK + +H K+ +GY +PP TYTA EA
Sbjct: 154 NEQPP-EPGSDPRKIWAFKAAKMKCQAISKLHQDKI--KGY-MPPNCTYTAYEA 203
>U41011-1|AAA82285.2| 166|Caenorhabditis elegans Hypothetical
protein D2024.5a protein.
Length = 166
Score = 26.2 bits (55), Expect(2) = 1.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 335 VNSLKWWISASMDVFISSREGGVSLASSVLTSPGGMSLRHCSMMRRDWRISSTRH 499
+ S +W ISAS S+ GG+ SS P G + S+ + ++S H
Sbjct: 85 IGSARWRISASRQSASSASSGGMGQNSSATYLPMGRGGNNRSLNNQRQPLNSLDH 139
Score = 23.0 bits (47), Expect(2) = 1.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 74 VHVSTASTFYRSISPKTTSRVPMMATMSASMEFLPIFSSAARCAKPGALIL 226
V ST +T I P TTS P T + S+ F+ + CA +++
Sbjct: 26 VSTSTTTTTTTEI-PLTTSFPPSDHTTATSIAFISLVVFGVACALIAKIVI 75
>U41011-2|AAM98042.1| 163|Caenorhabditis elegans Hypothetical
protein D2024.5b protein.
Length = 163
Score = 26.2 bits (55), Expect(2) = 1.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 335 VNSLKWWISASMDVFISSREGGVSLASSVLTSPGGMSLRHCSMMRRDWRISSTRH 499
+ S +W ISAS S+ GG+ SS P G + S+ + ++S H
Sbjct: 85 IGSARWRISASRQSASSASSGGMGQNSSATYLPMGRGGNNRSLNNQRQPLNSLDH 139
Score = 23.0 bits (47), Expect(2) = 1.2
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 74 VHVSTASTFYRSISPKTTSRVPMMATMSASMEFLPIFSSAARCAKPGALIL 226
V ST +T I P TTS P T + S+ F+ + CA +++
Sbjct: 26 VSTSTTTTTTTEI-PLTTSFPPSDHTTATSIAFISLVVFGVACALIAKIVI 75
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = -3
Query: 487 GDAPVP--PHHRAVPQRHAPRGGQDRRRQAHPALPGGDEDVHGGADPPLQAVHAGLPGAA 314
GDA P P H P RGGQ R P+ G + GG P Q+ +G PG
Sbjct: 183 GDAGAPGQPGHPGSPGNPG-RGGQRSRGLPGPSGRPGPQGPAGGPGQPGQSGGSGTPGQP 241
Query: 313 G 311
G
Sbjct: 242 G 242
>Z71180-7|CAK55177.1| 647|Caenorhabditis elegans Hypothetical
protein F22E12.4e protein.
Length = 647
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 56 FLKHKNVHVSTASTFYRSISPKTTSRVPMMATM-SASMEFLPIFSSAARCAKPGALILHL 232
F ++N HV S S+S TS + M SAS+ P S+A A +L L
Sbjct: 99 FKPYRNTHVFN-SISSESMSSMCTSHEASLEHMSSASLAMFPTSSTAQSDISRLAQVLSL 157
Query: 233 YGLGPPSETR*IPNSPLGASTAV*VEPGGT 322
G P S + P ASTA P T
Sbjct: 158 AGDSPASLALVTTSVPSTASTATIPPPATT 187
>Z71180-6|CAI79160.1| 702|Caenorhabditis elegans Hypothetical
protein F22E12.4d protein.
Length = 702
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 56 FLKHKNVHVSTASTFYRSISPKTTSRVPMMATM-SASMEFLPIFSSAARCAKPGALILHL 232
F ++N HV S S+S TS + M SAS+ P S+A A +L L
Sbjct: 175 FKPYRNTHVFN-SISSESMSSMCTSHEASLEHMSSASLAMFPTSSTAQSDISRLAQVLSL 233
Query: 233 YGLGPPSETR*IPNSPLGASTAV*VEPGGT 322
G P S + P ASTA P T
Sbjct: 234 AGDSPASLALVTTSVPSTASTATIPPPATT 263
>Z71180-5|CAD44114.1| 363|Caenorhabditis elegans Hypothetical
protein F22E12.4b protein.
Length = 363
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 56 FLKHKNVHVSTASTFYRSISPKTTSRVPMMATM-SASMEFLPIFSSAARCAKPGALILHL 232
F ++N HV S S+S TS + M SAS+ P S+A A +L L
Sbjct: 175 FKPYRNTHVFN-SISSESMSSMCTSHEASLEHMSSASLAMFPTSSTAQSDISRLAQVLSL 233
Query: 233 YGLGPPSETR*IPNSPLGASTAV*VEPGGT 322
G P S + P ASTA P T
Sbjct: 234 AGDSPASLALVTTSVPSTASTATIPPPATT 263
>Z71180-4|CAA94893.2| 723|Caenorhabditis elegans Hypothetical
protein F22E12.4a protein.
Length = 723
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 56 FLKHKNVHVSTASTFYRSISPKTTSRVPMMATM-SASMEFLPIFSSAARCAKPGALILHL 232
F ++N HV S S+S TS + M SAS+ P S+A A +L L
Sbjct: 175 FKPYRNTHVFN-SISSESMSSMCTSHEASLEHMSSASLAMFPTSSTAQSDISRLAQVLSL 233
Query: 233 YGLGPPSETR*IPNSPLGASTAV*VEPGGT 322
G P S + P ASTA P T
Sbjct: 234 AGDSPASLALVTTSVPSTASTATIPPPATT 263
>AL021475-8|CAK55192.1| 647|Caenorhabditis elegans Hypothetical
protein F22E12.4e protein.
Length = 647
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 56 FLKHKNVHVSTASTFYRSISPKTTSRVPMMATM-SASMEFLPIFSSAARCAKPGALILHL 232
F ++N HV S S+S TS + M SAS+ P S+A A +L L
Sbjct: 99 FKPYRNTHVFN-SISSESMSSMCTSHEASLEHMSSASLAMFPTSSTAQSDISRLAQVLSL 157
Query: 233 YGLGPPSETR*IPNSPLGASTAV*VEPGGT 322
G P S + P ASTA P T
Sbjct: 158 AGDSPASLALVTTSVPSTASTATIPPPATT 187
>AL021475-7|CAI79248.1| 702|Caenorhabditis elegans Hypothetical
protein F22E12.4d protein.
Length = 702
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 56 FLKHKNVHVSTASTFYRSISPKTTSRVPMMATM-SASMEFLPIFSSAARCAKPGALILHL 232
F ++N HV S S+S TS + M SAS+ P S+A A +L L
Sbjct: 175 FKPYRNTHVFN-SISSESMSSMCTSHEASLEHMSSASLAMFPTSSTAQSDISRLAQVLSL 233
Query: 233 YGLGPPSETR*IPNSPLGASTAV*VEPGGT 322
G P S + P ASTA P T
Sbjct: 234 AGDSPASLALVTTSVPSTASTATIPPPATT 263
>AL021475-6|CAD44157.1| 363|Caenorhabditis elegans Hypothetical
protein F22E12.4b protein.
Length = 363
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 56 FLKHKNVHVSTASTFYRSISPKTTSRVPMMATM-SASMEFLPIFSSAARCAKPGALILHL 232
F ++N HV S S+S TS + M SAS+ P S+A A +L L
Sbjct: 175 FKPYRNTHVFN-SISSESMSSMCTSHEASLEHMSSASLAMFPTSSTAQSDISRLAQVLSL 233
Query: 233 YGLGPPSETR*IPNSPLGASTAV*VEPGGT 322
G P S + P ASTA P T
Sbjct: 234 AGDSPASLALVTTSVPSTASTATIPPPATT 263
>AL021475-5|CAA16314.2| 723|Caenorhabditis elegans Hypothetical
protein F22E12.4a protein.
Length = 723
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 56 FLKHKNVHVSTASTFYRSISPKTTSRVPMMATM-SASMEFLPIFSSAARCAKPGALILHL 232
F ++N HV S S+S TS + M SAS+ P S+A A +L L
Sbjct: 175 FKPYRNTHVFN-SISSESMSSMCTSHEASLEHMSSASLAMFPTSSTAQSDISRLAQVLSL 233
Query: 233 YGLGPPSETR*IPNSPLGASTAV*VEPGGT 322
G P S + P ASTA P T
Sbjct: 234 AGDSPASLALVTTSVPSTASTATIPPPATT 263
>AF178536-1|AAD56365.1| 723|Caenorhabditis elegans EGL-9 protein.
Length = 723
Score = 29.1 bits (62), Expect = 3.5
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +2
Query: 56 FLKHKNVHVSTASTFYRSISPKTTSRVPMMATM-SASMEFLPIFSSAARCAKPGALILHL 232
F ++N HV S S+S TS + M SAS+ P S+A A +L L
Sbjct: 175 FKPYRNTHVFN-SISSESMSSMCTSHEASLEHMSSASLAMFPTSSTAQSDISRLAQVLSL 233
Query: 233 YGLGPPSETR*IPNSPLGASTAV*VEPGGT 322
G P S + P ASTA P T
Sbjct: 234 AGDSPASLALVTTSVPSTASTATIPPPATT 263
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = -3
Query: 466 HHRAVPQRHAPRGGQDRRRQAHPALPGGDEDVHGGADPPLQAVHAG-LPGAAGLHLHRRG 290
H R + H+PRG R P PG HG PP H G P G H H
Sbjct: 366 HGRHGSRSHSPRGHGHGGRHGPPHCPGR----HGHHGPPHHHHHDGRSPSRHGHHHHHHH 421
Query: 289 G 287
G
Sbjct: 422 G 422
>Z99169-1|CAB16306.2| 966|Caenorhabditis elegans Hypothetical
protein C26H9A.1 protein.
Length = 966
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -1
Query: 555 FVEFDVPIGTHGDCYDRYLCRVEEMRQSLRIIEQCLNDMPPG-EVKT-DDAKLTPPSREE 382
FV+ + + + + + + R EEM + LR +E+ + PG + K+ D L+ P++ E
Sbjct: 81 FVDLNAKMSLYSRTFVKQMRRCEEMERKLRFLEKQVITCKPGLDPKSIDYTDLSAPTQAE 140
Query: 381 M 379
M
Sbjct: 141 M 141
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 495 RVEEMRQSLRIIEQCLN-DMPPGEVKTDDAKLTPPSREEMKTSMEALIHHFK 343
+++E+++ + I Q N D+P + K DD S+EE K E + K
Sbjct: 887 KIKEIQECITAISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMK 938
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
T04H1.4a protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 495 RVEEMRQSLRIIEQCLN-DMPPGEVKTDDAKLTPPSREEMKTSMEALIHHFK 343
+++E+++ + I Q N D+P + K DD S+EE K E + K
Sbjct: 873 KIKEIQECITAISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMK 924
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 495 RVEEMRQSLRIIEQCLN-DMPPGEVKTDDAKLTPPSREEMKTSMEALIHHFK 343
+++E+++ + I Q N D+P + K DD S+EE K E + K
Sbjct: 873 KIKEIQECITAISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMK 924
>AB055112-1|BAB62293.1| 966|Caenorhabditis elegans VHA-7 protein.
Length = 966
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -1
Query: 555 FVEFDVPIGTHGDCYDRYLCRVEEMRQSLRIIEQCLNDMPPG-EVKT-DDAKLTPPSREE 382
FV+ + + + + + + R EEM + LR +E+ + PG + K+ D L+ P++ E
Sbjct: 81 FVDLNAKMSLYSRTFVKQMRRCEEMERKLRFLEKQVITCKPGLDPKSIDYTDLSAPTQAE 140
Query: 381 M 379
M
Sbjct: 141 M 141
>AC026301-13|AAP13737.1| 766|Caenorhabditis elegans Hypothetical
protein Y54F10BM.1 protein.
Length = 766
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -1
Query: 510 DRYLCRVEEMRQSLRIIEQCLNDMPPGEVKTDDAKLTPPSREEMKT 373
D L R+S RI C + PG KLT SR+ +T
Sbjct: 610 DAVLLLTPRRRRSTRIQNSCASAAAPGAASLSTEKLTQSSRKRART 655
>U40187-2|AAA81159.1| 282|Caenorhabditis elegans Collagen protein 8
protein.
Length = 282
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = -3
Query: 451 PQRHAPRGGQDRRRQAHPALPGGDEDVHGGADP------PLQAVHAGLPGAAG 311
P R PRG PA P GD+ HG P P + AG PGAAG
Sbjct: 140 PGRPGPRGPSGL---VGPAGPAGDQGRHGPPGPTGGQGGPGEQGDAGRPGAAG 189
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/67 (29%), Positives = 22/67 (32%)
Frame = -3
Query: 478 PVPPHHRAVPQRHAPRGGQDRRRQAHPALPGGDEDVHGGADPPLQAVHAGLPGAAGLHLH 299
P P P P G + Q P G G A P G PGA G H
Sbjct: 138 PGPAGEAGAPGPAGPDGQPGQDGQGGQPGPAGPAGPAGDAGAPGAPGQDGQPGAPGQDGH 197
Query: 298 RRGGSQG 278
R G+ G
Sbjct: 198 RSTGTPG 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,819
Number of Sequences: 27780
Number of extensions: 295259
Number of successful extensions: 1073
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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