Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_O07
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169...    29   5.5  
02_01_0615 - 4604373-4604537,4604618-4604707,4604871-4604989,460...    29   5.5  

>09_06_0038 -
           20415363-20415883,20415917-20416596,20416858-20416911,
           20417440-20417489,20417665-20417800,20419030-20419128,
           20419411-20419676
          Length = 601

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 368 APAAXSTPXGXPXPPPAPXXP 430
           APAA S+P   P P PAP  P
Sbjct: 65  APAASSSPSPSPAPAPAPSSP 85


>02_01_0615 -
           4604373-4604537,4604618-4604707,4604871-4604989,
           4605132-4605234,4605318-4605414,4605512-4605575,
           4605673-4605805,4605899-4606143,4606263-4606439,
           4607110-4607419
          Length = 500

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 356 RXTXAPAAXSTPXGXPXPPPAPXXPR 433
           R   +PAA ++P   P P PAP  PR
Sbjct: 35  RTHRSPAAAASPSPGPGPSPAPATPR 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,378,692
Number of Sequences: 37544
Number of extensions: 192443
Number of successful extensions: 1195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)