Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_O07
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    29   5.0  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    28   6.6  
AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase assoc...    28   6.6  

>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +2

Query: 362 TXAPAAXSTPXGXPXPPPAPXXPRXAGLXXP 454
           T AP   +TP     PPPAP  P  A    P
Sbjct: 366 TPAPEELTTPPPPAPPPPAPAVPEEAQAPTP 396


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 368  APAAXSTPXGXPXPPPAPXXPRXAGLXXP 454
            AP A + P G P PPP P     A +  P
Sbjct: 1002 APKAPAGPGGPPPPPPPPPADFFANIAPP 1030


>AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform b protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 368 APAAXSTPXGXPXPPPAPXXPRXAGLXXP 454
           AP A + P G P PPP P     A +  P
Sbjct: 241 APKAPAGPGGPPPPPPPPPADFFANIAPP 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,318,663
Number of Sequences: 27780
Number of extensions: 119473
Number of successful extensions: 506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)