Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_O03
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      48   2e-06
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.0  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 3/195 (1%)
 Frame = -1

Query: 743 VVIRDPGNVIGKHRKNHXSESRRF*XNPXTTWEGNTGHPVFATRYGKIAVNXCFGRHHVL 564
           + I + GN+ G +RK H  ++ R        ++  +  P+F T +GK+ V  C+      
Sbjct: 104 IYITENGNLGGVYRKVHLFDTER------KHFKKGSDFPIFETSFGKLGVMICWDTAFPE 157

Query: 563 NWMMFGQNGAEIVFNPSATIAGEGGSEYM--WNVEARNAAITNCYFTAAINRVGYEEFPN 390
              +   NGA+++      +A    + Y   W++  +  A  NC    A NRVG +E  +
Sbjct: 158 VARIHALNGADLL-----VVATNWENPYSDDWDLVTKARAFENCIPLVAANRVGTDEKLS 212

Query: 389 EFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCY 210
                           F+G S   GP G     L   ++G++   VDL+  + +R     
Sbjct: 213 ----------------FFGHSKIIGPTGKVIKALDEEKEGVISYTVDLDDAKPLRKNYYT 256

Query: 209 YMTQRL-DMYVNSLS 168
           +   R+ D+Y   LS
Sbjct: 257 FFEDRMPDLYKRLLS 271


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 442 FVIAAFLASTFHMYSLPPSPAIVAD 516
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 559  QFKTWCRPKXMFTAILPYLVANTGWPVLPS 648
            +F T    K +FTA+ P+L A T + ++PS
Sbjct: 1521 RFPTRVLCKPVFTAVPPFLFAGTDFALIPS 1550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,948
Number of Sequences: 5004
Number of extensions: 55885
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)