Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_N17
(1391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 35 0.023
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.054
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 1.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 1.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.3
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 6.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 8.1
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 8.1
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.1 bits (77), Expect = 0.023
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 708 PPPPPPXXXXKKKXXPPPPPP 646
PPPPPP + PPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 34.7 bits (76), Expect = 0.031
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 708 PPPPPPXXXXKKKXXPPPPPP 646
PPPPPP PPPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 951 PPPPPPPP 974
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 952 PPPPPPPP 975
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = -3
Query: 747 PPXRXXXXXXXXXPPPPPPXXXXKKKXXPP 658
PP PPPPPP K+K P
Sbjct: 12 PPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.054
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 708 PPPPPPXXXXKKKXXPPPPPP 646
PPPPPP PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Score = 33.9 bits (74), Expect = 0.054
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 708 PPPPPPXXXXKKKXXPPPPPP 646
PPPPPP PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 33.5 bits (73), Expect = 0.071
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 708 PPPPPPXXXXKKKXXPPPPPP 646
PPPPPP PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782
Score = 29.5 bits (63), Expect = 1.2
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 951 PPPPPPPPP 977
PPPPPPPPP
Sbjct: 775 PPPPPPPPP 783
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = -3
Query: 747 PPXRXXXXXXXXXPPPPPPXXXXKKKXXPPPPPP 646
PP P P PP PPPPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 935 GXXXXXPPPPPPPP 976
G PPPPPPPP
Sbjct: 769 GVAGAGPPPPPPPP 782
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 951 PPPPPPPP 974
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 953 PPPPPPPP 976
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 1.2
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 951 PPPPPPPPP 977
PPPPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 1.2
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 951 PPPPPPPPP 977
PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 1.2
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +3
Query: 951 PPPPPPPPP 977
PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 27.1 bits (57), Expect = 6.2
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 935 GXXXXXPPPPPPPP 976
G PPPPPPPP
Sbjct: 939 GVMPAFPPPPPPPP 952
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Frame = -3
Query: 747 PPXRXXXXXXXXXPPPPPP--------XXXXKKKXXPPPPPP 646
PP PPPPPP + + PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 23.8 bits (49), Expect(2) = 1.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 951 PPPPPPP 971
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.8 bits (49), Expect(2) = 1.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 954 PPPPPPP 974
PPPPPPP
Sbjct: 337 PPPPPPP 343
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 708 PPPPPPXXXXKKKXXPPPPP 649
P PP P K PPPPP
Sbjct: 729 PAPPTPAPTPAVKHHPPPPP 748
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 951 PPPPPPPP 974
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 954 PPPPPPPP 977
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 951 PPPPPPPP 974
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Score = 26.6 bits (56), Expect = 8.1
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 952 PPPPPPPP 975
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,762
Number of Sequences: 5004
Number of extensions: 23183
Number of successful extensions: 524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 771025064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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