Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_N08
(781 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor ... 31 3.5
BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, be... 31 3.5
BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, be... 31 3.5
AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, be... 31 3.5
AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, be... 31 3.5
AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, b... 31 3.5
AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, b... 31 3.5
AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, be... 31 3.5
AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, be... 31 3.5
AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, b... 31 3.5
AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, b... 31 3.5
AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor bet... 31 3.5
AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B p... 31 3.5
AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, be... 31 3.5
M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta ... 30 8.1
>X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor b
protein.
Length = 533
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, beta
protein.
Length = 482
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 49 PPGPPLPPSTAPSLGGSGAPPPPPMPP 75
>AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor beta
protein.
Length = 533
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B
protein.
Length = 533
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 100 PPGPPLPPSTAPSLGGSGAPPPPPMPP 126
>AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, beta
variant protein.
Length = 577
Score = 31.5 bits (68), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P APS G P PPP PP
Sbjct: 140 PPGPPLPPSTAPSLGGSGAPPPPPMPP 166
>M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta
protein.
Length = 533
Score = 30.3 bits (65), Expect = 8.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
PP P AP+ G P PPP PP
Sbjct: 100 PPGPPLPPSTAPTLGGSGAPPPPPMPP 126
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,943,595
Number of Sequences: 237096
Number of extensions: 783473
Number of successful extensions: 2553
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2373
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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