Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_N08
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   4.9  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   4.9  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   4.9  

>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
           PP P    +  P+ G    P PPP PP
Sbjct: 631 PPPPPPPPMGLPAVGAGAPPPPPPPPP 657


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 695 PPXPXXXRVXAPSXGDXXRPXPPPXPP 775
           PP P    +  P+ G    P PPP PP
Sbjct: 457 PPPPPPPPMGLPAVGAGAPPPPPPPPP 483


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 671 PXXTXXGXPPXPXXXRVXAPSXGDXXRPXPPPXPP 775
           P       PP P    +  PS      P PPP PP
Sbjct: 489 PAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPP 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,828,577
Number of Sequences: 27780
Number of extensions: 98985
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)