Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_N06
         (1411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   2.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   2.0  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    28   2.7  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   8.3  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
 Frame = -1

Query: 766 PXERXXPGGXRGGXGXWGGG-XXXPPXXGXXXGGGEXXXXXRGPKXGXXXXHXXXXGXXX 590
           P  R   GG RGG G + GG        G   GGG      RG + G         G   
Sbjct: 5   PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGR--GGARGGRGGRGGARGGRGGSSG 62

Query: 589 XXGXXXGG 566
             G   GG
Sbjct: 63  GRGGAKGG 70


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 642 PLXXLXXSPPPXXXPXXGGXXXPPPQXPXP 731
           P   +   PPP   P   G   PPP  P P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
 Frame = +3

Query: 666 PPPXXXPXXGGXXXPPPQ-----XPXPPRXPPGXXLSXGG 770
           P P   P  GG   PPP         PP  PP   +S GG
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 836 GXPSXGXLXPXFXPPPAXXRLXPPSGEG 753
           G P  G + P F PP A  +  PPSG G
Sbjct: 637 GSPMIGYMAPQFIPPYAMPQF-PPSGNG 663


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 748 PGGXRGGXGXWGGGXXXPPXXGXXXGG 668
           PGG  GG G +GGG   P   G   GG
Sbjct: 230 PGGFEGGPGGFGGG---PGGFGGGLGG 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.143    0.487 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,999
Number of Sequences: 5004
Number of extensions: 18562
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 782948132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)