Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_N06
(1411 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 34 0.28
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.49
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 32 0.85
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 1.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 1.1
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 32 1.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 1.1
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 31 2.6
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 31 2.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 2.6
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 31 2.6
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 31 2.6
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 31 2.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.4
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 30 3.4
Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical pr... 30 4.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 6.0
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 6.0
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 29 7.9
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 29 7.9
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 29 7.9
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 7.9
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 33.9 bits (74), Expect = 0.28
Identities = 29/105 (27%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Frame = +3
Query: 666 PPPXXXPXX-GGXXXPPPQXPXPPRXPPGXXLSXGGXQAXXGRGGXKXRXEXPG--XGXP 836
P P P GG P P PR PPG GG Q G G PG P
Sbjct: 155 PGPKGPPGPPGGHGEPGPAGRGGPRGPPG----PGGPQGEAGEDGGAGNPGTPGQVRSLP 210
Query: 837 LQPTKXXEXXXXXXRXXXXGRGXXGGPXRXGXXXPGXXXSXXGGP 971
P + + G G P R G P G P
Sbjct: 211 SPPGEPGQPGEPGGPGEPGADGRPGHPGRAGPPGPPGDNGPNGEP 255
Score = 30.3 bits (65), Expect = 3.4
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +2
Query: 755 PLXRGGX-GXXGPGGXEXEGGEXRXRGTPTAHXXXRAXXXXP 877
P RGG G GPGG + E GE G P R+ P
Sbjct: 172 PAGRGGPRGPPGPGGPQGEAGEDGGAGNPGTPGQVRSLPSPP 213
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 33.1 bits (72), Expect = 0.49
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 666 PPPXXXPXXGGXXXPPPQXPXPPRXPP 746
PPP GG PPP P PR PP
Sbjct: 125 PPPPRKSRAGGSSPPPPPPPRVPRTPP 151
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical protein
C53B4.5 protein.
Length = 289
Score = 32.3 bits (70), Expect = 0.85
Identities = 29/125 (23%), Positives = 33/125 (26%), Gaps = 6/125 (4%)
Frame = +3
Query: 669 PPXXXPXXGGXXXPPPQXPXPPRXP-----PGXXLSXGGXQAXXGRGGXKXRXEXPGXGX 833
PP G P P P P P GG G G R P G
Sbjct: 148 PPGPQGNKGPLGPPGPPGPEGPNGTAGNKGPAGPPGPGGKPGPAGPPGENGRNGEPQPGS 207
Query: 834 PLQPTKXXEXXXXXXRXXXXGRGXXGGPXRXGXXXPGXXXSXXGGP-XGGXPSRXXXPXX 1010
P +P + + G GGP G G P G P R P
Sbjct: 208 PGEPGRPGQPGSRGPAGQPGKDGAQGGPGEKGANGEPGQPGRDGQPGRPGQPGRDGHPGE 267
Query: 1011 XAIXP 1025
+ P
Sbjct: 268 KGVCP 272
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 1.1
Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Frame = +3
Query: 555 PXXXPPXXXPXXXXXPXXXXXXXXFPXFGPLXXLXXSPPPXXXPXXGGXXXPPPQXP--- 725
P P P P P G L + PPP P G PPP P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Query: 726 ---XPPRXPPG 749
PP PPG
Sbjct: 781 KGGPPPPPPPG 791
Score = 29.9 bits (64), Expect = 4.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 673 PXLXPX*GGXXPPRPSXPXPPXXPXXXPSPEGGXRRXXAGG 795
P L P GG PP P PP P P G +GG
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGG 757
Score = 29.1 bits (62), Expect = 7.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 666 PPPXXXPXXGGXXXPPPQXPXPP 734
PPP P GG PPP PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPP 737
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 1.1
Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Frame = +3
Query: 555 PXXXPPXXXPXXXXXPXXXXXXXXFPXFGPLXXLXXSPPPXXXPXXGGXXXPPPQXP--- 725
P P P P P G L + PPP P G PPP P
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
Query: 726 ---XPPRXPPG 749
PP PPG
Sbjct: 781 KGGPPPPPPPG 791
Score = 29.9 bits (64), Expect = 4.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 673 PXLXPX*GGXXPPRPSXPXPPXXPXXXPSPEGGXRRXXAGG 795
P L P GG PP P PP P P G +GG
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGG 757
Score = 29.1 bits (62), Expect = 7.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 666 PPPXXXPXXGGXXXPPPQXPXPP 734
PPP P GG PPP PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPP 737
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 31.9 bits (69), Expect = 1.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 837 GVPLXRXSPPSXSXPPGPXXPXPP 766
G+P+ + SPP PPGP P P
Sbjct: 241 GIPMEKKSPPGPRGPPGPAGPDGP 264
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 1.1
Identities = 21/71 (29%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Frame = +3
Query: 555 PXXXPPXXXPXXXXXPXXXXXXXXFPXFGPLXXLXXSPPPXXXPXXGGXXXPPPQXP--- 725
P P P P P G L + PPP P G PPP P
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 363
Query: 726 ---XPPRXPPG 749
PP PPG
Sbjct: 364 KGGPPPPPPPG 374
Score = 29.9 bits (64), Expect = 4.5
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 673 PXLXPX*GGXXPPRPSXPXPPXXPXXXPSPEGGXRRXXAGG 795
P L P GG PP P PP P P G +GG
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGG 340
Score = 29.1 bits (62), Expect = 7.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 666 PPPXXXPXXGGXXXPPPQXPXPP 734
PPP P GG PPP PP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPP 320
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Frame = +3
Query: 666 PPPXXXPXX----GGXXXPPPQXPXPPRXPPGXXLSXG 767
PPP P GG PPP PP PPG L G
Sbjct: 774 PPPSAIPLPPRLQGGIPPPPPLGIIPPPPPPGNLLMNG 811
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 30.7 bits (66), Expect = 2.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 663 SPPPXXXPXXGGXXXPPPQXPXPP 734
+PPP P G PPP P PP
Sbjct: 233 APPPPPLPPVGAGAPPPPPPPPPP 256
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 2.6
Identities = 36/160 (22%), Positives = 41/160 (25%), Gaps = 11/160 (6%)
Frame = +3
Query: 534 RXXQXXXPXXXPPXXXPXXXXXPXXXXXXXXFPXFG--PLXXLXXSPPPXXX----PXXG 695
R + P PP P P P P SPPP P
Sbjct: 226 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 285
Query: 696 GXXXPPPQXPXPPRXPPGXXLSXGGXQAXXGRGGXKXRXEXPGXGXPLQ-----PTKXXE 860
G PPP+ PP PP G GG P + P +
Sbjct: 286 GGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 345
Query: 861 XXXXXXRXXXXGRGXXGGPXRXGXXXPGXXXSXXGGPXGG 980
GR GGP + GGP GG
Sbjct: 346 TGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGG 385
Score = 30.3 bits (65), Expect = 3.4
Identities = 37/177 (20%), Positives = 46/177 (25%), Gaps = 4/177 (2%)
Frame = +1
Query: 673 PXLXPX*GGXXPPRPSXPXPPXXPXXXPSPEGGXRRXXAGGGXXXGXRXPXEGXPYSPXK 852
P P G PPR P PP P P GG G P G SP
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP--PPPPPRG---SPPT 309
Query: 853 XQSXAXXXXAXXXXXGGXXGXPXGRXXRXXXAXXPXEGARXAAXPPXXXXPXXXRSXPXX 1032
G P R R P G+ PP P
Sbjct: 310 GSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSE 369
Query: 1033 XGXEN-XXPTXTPKA---XSPXESXXYTXXARQXXHXPPXXXXPXXPLXNLXPSPKP 1191
E+ P P+ P +S + +R+ P P P+ +P
Sbjct: 370 ESSESREGPRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRP 426
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 2.6
Identities = 36/160 (22%), Positives = 41/160 (25%), Gaps = 11/160 (6%)
Frame = +3
Query: 534 RXXQXXXPXXXPPXXXPXXXXXPXXXXXXXXFPXFG--PLXXLXXSPPPXXX----PXXG 695
R + P PP P P P P SPPP P
Sbjct: 247 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 306
Query: 696 GXXXPPPQXPXPPRXPPGXXLSXGGXQAXXGRGGXKXRXEXPGXGXPLQ-----PTKXXE 860
G PPP+ PP PP G GG P + P +
Sbjct: 307 GGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 366
Query: 861 XXXXXXRXXXXGRGXXGGPXRXGXXXPGXXXSXXGGPXGG 980
GR GGP + GGP GG
Sbjct: 367 TGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGG 406
Score = 30.3 bits (65), Expect = 3.4
Identities = 37/177 (20%), Positives = 46/177 (25%), Gaps = 4/177 (2%)
Frame = +1
Query: 673 PXLXPX*GGXXPPRPSXPXPPXXPXXXPSPEGGXRRXXAGGGXXXGXRXPXEGXPYSPXK 852
P P G PPR P PP P P GG G P G SP
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP--PPPPPRG---SPPT 330
Query: 853 XQSXAXXXXAXXXXXGGXXGXPXGRXXRXXXAXXPXEGARXAAXPPXXXXPXXXRSXPXX 1032
G P R R P G+ PP P
Sbjct: 331 GSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSE 390
Query: 1033 XGXEN-XXPTXTPKA---XSPXESXXYTXXARQXXHXPPXXXXPXXPLXNLXPSPKP 1191
E+ P P+ P +S + +R+ P P P+ +P
Sbjct: 391 ESSESREGPRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRP 447
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 2.6
Identities = 36/160 (22%), Positives = 41/160 (25%), Gaps = 11/160 (6%)
Frame = +3
Query: 534 RXXQXXXPXXXPPXXXPXXXXXPXXXXXXXXFPXFG--PLXXLXXSPPPXXX----PXXG 695
R + P PP P P P P SPPP P
Sbjct: 232 RGKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPA 291
Query: 696 GXXXPPPQXPXPPRXPPGXXLSXGGXQAXXGRGGXKXRXEXPGXGXPLQ-----PTKXXE 860
G PPP+ PP PP G GG P + P +
Sbjct: 292 GGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPP 351
Query: 861 XXXXXXRXXXXGRGXXGGPXRXGXXXPGXXXSXXGGPXGG 980
GR GGP + GGP GG
Sbjct: 352 TGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGG 391
Score = 30.3 bits (65), Expect = 3.4
Identities = 37/177 (20%), Positives = 46/177 (25%), Gaps = 4/177 (2%)
Frame = +1
Query: 673 PXLXPX*GGXXPPRPSXPXPPXXPXXXPSPEGGXRRXXAGGGXXXGXRXPXEGXPYSPXK 852
P P G PPR P PP P P GG G P G SP
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP--PPPPPRG---SPPT 315
Query: 853 XQSXAXXXXAXXXXXGGXXGXPXGRXXRXXXAXXPXEGARXAAXPPXXXXPXXXRSXPXX 1032
G P R R P G+ PP P
Sbjct: 316 GSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSE 375
Query: 1033 XGXEN-XXPTXTPKA---XSPXESXXYTXXARQXXHXPPXXXXPXXPLXNLXPSPKP 1191
E+ P P+ P +S + +R+ P P P+ +P
Sbjct: 376 ESSESREGPRGGPRGGPRGGPRKSSEESSESREEPRGPRRSPPTGSPPTGSPPTGRP 432
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 30.7 bits (66), Expect = 2.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 663 SPPPXXXPXXGGXXXPPPQXPXPP 734
+PPP P G PPP P PP
Sbjct: 219 APPPPPLPPVGAGAPPPPPPPPPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 30.7 bits (66), Expect = 2.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 663 SPPPXXXPXXGGXXXPPPQXPXPP 734
+PPP P G PPP P PP
Sbjct: 219 APPPPPLPPVGAGAPPPPPPPPPP 242
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 30.7 bits (66), Expect = 2.6
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Frame = +3
Query: 666 PPPXXXPXX----GGXXXPPPQXPXPPRXPPGXXLSXG 767
PPP P GG PPP PP PPG L G
Sbjct: 774 PPPSAIPLPPRLQGGIPPPPPLGIIPPPPPPGNLLMNG 811
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 666 PPPXXXPXXGGXXXPPPQXPXPPRXPPG 749
PPP P G PPP PP P G
Sbjct: 350 PPPPRYPSAGPGMYPPPPPSRPPAPPSG 377
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 3.4
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 666 PPPXXXPXXGGXXXPPPQXPXPPRXPPG 749
PPP P G PPP PP P G
Sbjct: 360 PPPPRYPSAGPGMYPPPPPSRPPAPPSG 387
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 30.3 bits (65), Expect = 3.4
Identities = 19/64 (29%), Positives = 20/64 (31%)
Frame = -1
Query: 745 GGXRGGXGXWGGGXXXPPXXGXXXGGGEXXXXXRGPKXGXXXXHXXXXGXXXXXGXXXGG 566
G GG G WGGG G GGG G + G G G GG
Sbjct: 106 GNNNGGGGNWGGGGNNDGGWGGNNGGG-GGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGG 164
Query: 565 XXXG 554
G
Sbjct: 165 RGGG 168
Score = 29.1 bits (62), Expect = 7.9
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = -1
Query: 748 PGGXRGGXGXWG-------GGXXXPPXXGXXXGGGEXXXXXRG 641
PGG GG G WG GG P G GGG RG
Sbjct: 22 PGGWGGGPGRWGGWGGNRWGGGGGPGGWGNNGGGGWGRGGGRG 64
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -1
Query: 745 GGXRGGXGXWGGGXXXPPXXGXXXGGG 665
GG GG G WGG G GGG
Sbjct: 69 GGNNGGGGNWGGNGGGRGDWGGNGGGG 95
>Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical
protein F54B11.1 protein.
Length = 339
Score = 29.9 bits (64), Expect = 4.5
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +3
Query: 639 GPLXXLXXSPPPXXXPXXGGXXXPPPQXPXPPRXPPGXXLSXGGXQAXXGRGGXKXRXE 815
GP+ PP G PP P PP PPG S G GG + E
Sbjct: 259 GPMGPPGLMGPPGLDAQNGANGFGPPGLPGPP-GPPGRPGSDGNPGVPGQSGGSRRHGE 316
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 666 PPPXXXPXXGGXXXPPPQXPXPPRXPP 746
PPP P GG PPP PP PP
Sbjct: 95 PPPP--PMMGGIPPPPPMFGAPPPPPP 119
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.5 bits (63), Expect = 6.0
Identities = 27/107 (25%), Positives = 28/107 (26%)
Frame = +3
Query: 666 PPPXXXPXXGGXXXPPPQXPXPPRXPPGXXLSXGGXQAXXGRGGXKXRXEXPGXGXPLQP 845
P P P G P P P P PPG G G+ G G G P
Sbjct: 185 PGPAGSP--AGPSGPGPAGPPGPAGPPGND-GQPGQPGGPGQDGASSAGGEAGPG----P 237
Query: 846 TKXXEXXXXXXRXXXXGRGXXGGPXRXGXXXPGXXXSXXGGPXGGXP 986
G G GGP G P G P P
Sbjct: 238 AGPPGPAGPAGPDGQSGSGSAGGPGPKGPPGPAGQPGSDGNPGTAGP 284
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 29.5 bits (63), Expect = 6.0
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 6/90 (6%)
Frame = +3
Query: 693 GGXXXPPPQXPXPPRXPPGXXLSXGGXQ--AXXGRGGXKXRXEXPG----XGXPLQPTKX 854
GG P P P P PPG + GG G G R PG G P P
Sbjct: 250 GGSSRPGPPGPAGPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQPGPDGQPGAPGND 309
Query: 855 XEXXXXXXRXXXXGRGXXGGPXRXGXXXPG 944
GRG GG G G
Sbjct: 310 GTPGTDAAYCPCPGRGGGGGGYGAGAHHGG 339
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 29.1 bits (62), Expect = 7.9
Identities = 24/89 (26%), Positives = 26/89 (29%)
Frame = +3
Query: 663 SPPPXXXPXXGGXXXPPPQXPXPPRXPPGXXLSXGGXQAXXGRGGXKXRXEXPGXGXPLQ 842
S P GG P P P P P G S G A G + PG P
Sbjct: 187 SGAPGVPGQTGGASLPGPPGPAGPPGPSGQPGSNGNAGAPGAPGQV---VDVPGTPGPAG 243
Query: 843 PTKXXEXXXXXXRXXXXGRGXXGGPXRXG 929
P + G G GGP G
Sbjct: 244 PPGPPGPAGAPGQPGQSGSGQPGGPGPQG 272
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.1 bits (62), Expect = 7.9
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +3
Query: 666 PPPXXXPXXGGXXXPPPQXPXPPRXPPGXXLSXGGXQAXXGRG 794
PPP P GG PPP P PP G + G G
Sbjct: 40 PPPPPPPCGGGYEAPPP--PPPPSYAGGPSYAGPSYAGSYGPG 80
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.1 bits (62), Expect = 7.9
Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Frame = -1
Query: 1003 GXXXREGXP-PXGPPXXXXWXPGCXXPXLXGPPXXPLPXXXXRXXXXXCSXXXVGCRGXP 827
G R+G P P GPP + PG + GPP + G G P
Sbjct: 988 GLPGRDGQPGPVGPPGDDGY-PGAPGQDIYGPPGQAGQDGYPGLDGLPGAP---GLNGEP 1043
Query: 826 -XPGLSXLXFXPPRPXXAXXP--PXERXXPG--GXRGGXGXWG 713
PG + P P + P P ER PG G RG G G
Sbjct: 1044 GSPGQYGMPGLPGGPGESGLPGYPGERGLPGLDGKRGHDGLPG 1086
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.1 bits (62), Expect = 7.9
Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Frame = -1
Query: 1003 GXXXREGXP-PXGPPXXXXWXPGCXXPXLXGPPXXPLPXXXXRXXXXXCSXXXVGCRGXP 827
G R+G P P GPP + PG + GPP + G G P
Sbjct: 1245 GLPGRDGQPGPVGPPGDDGY-PGAPGQDIYGPPGQAGQDGYPGLDGLPGAP---GLNGEP 1300
Query: 826 -XPGLSXLXFXPPRPXXAXXP--PXERXXPG--GXRGGXGXWG 713
PG + P P + P P ER PG G RG G G
Sbjct: 1301 GSPGQYGMPGLPGGPGESGLPGYPGERGLPGLDGKRGHDGLPG 1343
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.1 bits (62), Expect = 7.9
Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Frame = -1
Query: 1003 GXXXREGXP-PXGPPXXXXWXPGCXXPXLXGPPXXPLPXXXXRXXXXXCSXXXVGCRGXP 827
G R+G P P GPP + PG + GPP + G G P
Sbjct: 1244 GLPGRDGQPGPVGPPGDDGY-PGAPGQDIYGPPGQAGQDGYPGLDGLPGAP---GLNGEP 1299
Query: 826 -XPGLSXLXFXPPRPXXAXXP--PXERXXPG--GXRGGXGXWG 713
PG + P P + P P ER PG G RG G G
Sbjct: 1300 GSPGQYGMPGLPGGPGESGLPGYPGERGLPGLDGKRGHDGLPG 1342
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.1 bits (62), Expect = 7.9
Identities = 35/137 (25%), Positives = 37/137 (27%), Gaps = 4/137 (2%)
Frame = +3
Query: 639 GPLXXLXXSPPPXXXPXXGGXXXPPPQXPXPPRXPPGXXLSXG--GXQAXXGRGGXKXRX 812
GP + P G PPP P P PPG G G G G
Sbjct: 187 GPDGNAGPAGAPGVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTN-TV 245
Query: 813 EXPGXGXPLQPTKXXEXXXXXXRXXXXGRGXXGGPXRXGXXXPGXXXSXXGGP-XGGXPS 989
PG P P G G P G P GGP G P
Sbjct: 246 NSPGGPGPAGP------PGPPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPG 299
Query: 990 RXXXP-XXXAIXPTPXR 1037
+ P A P P R
Sbjct: 300 QDGGPGTDAAYCPCPPR 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.143 0.487
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,718,706
Number of Sequences: 27780
Number of extensions: 267153
Number of successful extensions: 1873
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4006571030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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