Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_N05
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.58 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   5.5  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 340 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 242
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/72 (26%), Positives = 20/72 (27%), Gaps = 1/72 (1%)
 Frame = -2

Query: 745 GXQXTRXPXXXXTXXXKTPQKXTXPXXPPXXPXQXVXXEHGG-PGNXXXXPXRPPPAXXX 569
           G      P         TP   T P  PP  P           P      P  PP A   
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456

Query: 568 XEIPXXXPAXPP 533
             +P   PA PP
Sbjct: 457 PPLPAGMPAAPP 468



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 19/62 (30%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
 Frame = -2

Query: 673 PXXPPXXPXQXVXXEHGGPGNXXXXPXRPP-PA--XXXXEIPXXXPAXPPXXXTXXLAPV 503
           P  PP  P          P      P  PP PA       +P   PA PP       APV
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPV 488

Query: 502 XS 497
            S
Sbjct: 489 AS 490


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 355 VQXCRRAPPPPLRSLISNLSNTCDLTPLPEW 263
           VQ      P P+ S    ++N  +L PLPEW
Sbjct: 2   VQTAALHGPKPMDSSHIKVTNVKELKPLPEW 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,573
Number of Sequences: 5004
Number of extensions: 13963
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)