Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_N05
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   9.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   9.0  

>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/67 (28%), Positives = 22/67 (32%)
 Frame = -2

Query: 631 EHGGPGNXXXXPXRPPPAXXXXEIPXXXPAXPPXXXTXXLAPVXSXHXYTLXDVXXDPXX 452
           +HG PG     P  PP A      P   P  PP           + H Y    +   P  
Sbjct: 436 QHGAPGGSGAPPPGPPGAYPGNGAPGGPPGGPPQFPGHP-GMDPNYHYYQQHGM-MPPHP 493

Query: 451 GXPGQXP 431
           G PG  P
Sbjct: 494 GHPGYPP 500


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/62 (24%), Positives = 17/62 (27%)
 Frame = -2

Query: 691 PQKXTXPXXPPXXPXQXVXXEHGGPGNXXXXPXRPPPAXXXXEIPXXXPAXPPXXXTXXL 512
           P     P  PP  P   +      P +    P  PPP       P   P  PP       
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 325

Query: 511 AP 506
            P
Sbjct: 326 GP 327


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/62 (24%), Positives = 17/62 (27%)
 Frame = -2

Query: 691 PQKXTXPXXPPXXPXQXVXXEHGGPGNXXXXPXRPPPAXXXXEIPXXXPAXPPXXXTXXL 512
           P     P  PP  P   +      P +    P  PPP       P   P  PP       
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 335

Query: 511 AP 506
            P
Sbjct: 336 GP 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,407,453
Number of Sequences: 27780
Number of extensions: 104032
Number of successful extensions: 320
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)