Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M24
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   103   3e-23
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   102   5e-23
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   2.9  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  103 bits (247), Expect = 3e-23
 Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
 Frame = -3

Query: 752 GPLKIFQQGFRFXLGLSAXFPGGGFXNVXKLNXLKXXPGGYFGRXVIWTQSAFGRLDPLF 573
           GPL +F +            PG    NV +LN L+  PGG+ GR VIWT+SAFG LD +F
Sbjct: 206 GPLVVFNEDAGIVKAFR-NIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVF 264

Query: 572 GSWKTPSEQKKNFNLPQPKMANTDLTRXXKXDEIRKVLRAPN-KRVIRA-TRKLNPLTNN 399
           GS    ++ KKN+ LP+  ++N D+TR    DEI+ +++A    RV RA  +K NPL N 
Sbjct: 265 GSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324

Query: 398 KAMLKLNPY 372
             + +LNPY
Sbjct: 325 AVLARLNPY 333


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  102 bits (245), Expect = 5e-23
 Identities = 55/129 (42%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
 Frame = -3

Query: 752 GPLKIFQQGFRFXLGLSAXFPGGGFXNVXKLNXLKXXPGGYFGRXVIWTQSAFGRLDPLF 573
           GPL +F +            PG    NV +LN L+  PGG+ GR VIWT+SAFG LD +F
Sbjct: 206 GPLVVFNEDTGIVKAFR-NIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVF 264

Query: 572 GSWKTPSEQKKNFNLPQPKMANTDLTRXXKXDEIRKVLRAPN-KRVIRA-TRKLNPLTNN 399
           GS    ++ KKN+ LP+  ++N D+TR    DEI+ +++A    RV RA  +K NPL N 
Sbjct: 265 GSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324

Query: 398 KAMLKLNPY 372
             + +LNPY
Sbjct: 325 AVLSRLNPY 333


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 369 RVRIEFQHRLVIGERVQFACSTDHAFVGS 455
           +V +EF+ RL IG+RV+       AF+GS
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,336
Number of Sequences: 5004
Number of extensions: 35146
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)