Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M24
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          116   2e-26
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   113   2e-25
11_01_0205 + 1617044-1617197,1617845-1618233                           30   2.3  
02_04_0073 - 19471254-19472681                                         28   7.1  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  116 bits (280), Expect = 2e-26
 Identities = 57/127 (44%), Positives = 79/127 (62%)
 Frame = -3

Query: 752 GPLKIFQQGFRFXLGLSAXFPGGGFXNVXKLNXLKXXPGGYFGRXVIWTQSAFGRLDPLF 573
           GPL ++       +      PG    NV +LN L   PGG+ GR VIWT+SAF +L+ ++
Sbjct: 210 GPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVY 269

Query: 572 GSWKTPSEQKKNFNLPQPKMANTDLTRXXKXDEIRKVLRAPNKRVIRATRKLNPLTNNKA 393
           G+++ PS +KK F LP+PKMAN DL R    DE++ V++  NK V R  ++ NPL N  A
Sbjct: 270 GTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAA 329

Query: 392 MLKLNPY 372
           +LKLNPY
Sbjct: 330 VLKLNPY 336


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  113 bits (271), Expect = 2e-25
 Identities = 56/127 (44%), Positives = 76/127 (59%)
 Frame = -3

Query: 752 GPLKIFQQGFRFXLGLSAXFPGGGFXNVXKLNXLKXXPGGYFGRXVIWTQSAFGRLDPLF 573
           GPL ++       +      PG    NV +LN L   PGG+ GR VIWT+ AF +LD ++
Sbjct: 209 GPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVY 268

Query: 572 GSWKTPSEQKKNFNLPQPKMANTDLTRXXKXDEIRKVLRAPNKRVIRATRKLNPLTNNKA 393
           G + TP+ +KK F LP+PKMAN DL+R    DE++ V++  NK V     + NPL N  A
Sbjct: 269 GGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAA 328

Query: 392 MLKLNPY 372
           +LKLNPY
Sbjct: 329 VLKLNPY 335


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 378 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 467
           ++  HRLV G+  +F    +H FV S ++L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 604 SPHSAGLTPYSVHGRHHRNKR 542
           +P   G +P S HG HHR+++
Sbjct: 20  APRPRGASPLSSHGHHHRSRK 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,322
Number of Sequences: 37544
Number of extensions: 283978
Number of successful extensions: 453
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)