Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M24
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   100   2e-21

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
 Frame = -3

Query: 752 GPLKIFQQGFRFXLGLSAXFPGGGFXNVXKLNXLKXXPGGYFGRXVIWTQSAFGRLDPLF 573
           GP+ I+ Q            PG    NV +LN LK  PGG+ GR +IWT+SAF +LD ++
Sbjct: 205 GPVVIYGQDAECARAFR-NIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIY 263

Query: 572 GSWKTPSEQ-KKNFNLPQPKMANTDLTRXXKXDEIRKVLRAPNKRVIRATRKLNPLTNNK 396
           G+    S Q KK +++P P MAN+D +R  + +E+ K +RAP K  +      NPL    
Sbjct: 264 GTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRT 323

Query: 395 AMLKLNPY 372
            + KLNPY
Sbjct: 324 LLYKLNPY 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,109,820
Number of Sequences: 27780
Number of extensions: 216799
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)