Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M22
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    29   1.0  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.6  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   9.8  

>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 238  QTARLTPRTPSRRSLRGESKALKRQPSRYGSPSGRPDSAAGVPEYPAGPEPACR 399
            +T+      P + + R  SK L+      GSPS    S A     P  PEPA +
Sbjct: 865  RTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPALK 918


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 280 LRGESKALKRQPSRYGSPSGRPDSAA 357
           L   S +  RQP +Y SPSG  +SAA
Sbjct: 608 LNPTSGSFLRQPMQYSSPSGVSESAA 633


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 389 GSGPAGYSGTPAALSGRPDG 330
           G GP G+ G P    G P G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGG 246


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
 Frame = +1

Query: 223 GQHYNQTARLTPRTPSRRSLRGES-----KALKRQPS-RYGSPSGRPDSAAGVPEY 372
           G+ +  + RL  R+PS    R  S     ++ +R  S RY S S  PD  +  P+Y
Sbjct: 104 GRVHGDSGRLRSRSPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSPDY 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,536
Number of Sequences: 5004
Number of extensions: 38741
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)