Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M22
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67952-2|AAB07576.1|  139|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z75531-11|CAN86615.1|  129|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical pr...    29   4.0  

>U67952-2|AAB07576.1|  139|Caenorhabditis elegans Hypothetical
           protein F39B3.3 protein.
          Length = 139

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +1

Query: 244 ARLTPRTPSRRSLRGESKALKRQPSRYGSPSGRPDSAAGVPEYPAGP---EPACRVGTRY 414
           +R  P T    S+R  S+ ++R P RYGS      ++ G P         + + R G RY
Sbjct: 58  SRSHPTTDPSHSVRRSSR-IRRVPDRYGSSVEHLSTSTGTPRGSTSTQLGQASTRNGNRY 116

Query: 415 TAN 423
           TA+
Sbjct: 117 TAS 119


>AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical
           protein C30F12.5 protein.
          Length = 392

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 111 RGPKDFRTHPLN----DSPALLHPTSDPL*GQNPDEVGGLPRSTLQPDGAAHP 257
           +G KD+    +     D P + HP   PL   +P   G +PR+ L P+GA  P
Sbjct: 303 KGQKDYENGSMGQLPIDEPRIGHPLYSPLPPIDPT-YGTIPRARLAPNGAPPP 354


>Z75531-11|CAN86615.1|  129|Caenorhabditis elegans Hypothetical
           protein C54D10.13 protein.
          Length = 129

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -3

Query: 235 CSVDRGNPPTSSGF*PQRGSDVGCKSAGESFSGWVLKS 122
           CS DR N    S F  QRG  V  KS  E+FS  ++K+
Sbjct: 82  CSQDRCNNERDSFF-HQRGGGVSWKSGAETFSTSIIKT 118


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 78  RLNDLQVLRADRGPKDFRTH-PLNDSPALLHPTSDPL 185
           RL+D+ + R+DR  +  R+H  +  SP L H TS  L
Sbjct: 210 RLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTL 246


>U97194-5|AAB52448.1|  442|Caenorhabditis elegans Hypothetical
           protein C37A2.3 protein.
          Length = 442

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 158 TLTPDVRSSLR-SEPG*GRGVTAVNTTTRRRGS 253
           ++T D+ SSL  SEP  G  V+AV+T  RR+GS
Sbjct: 170 SITGDLVSSLAVSEPHAGSDVSAVHTHARRQGS 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,840,040
Number of Sequences: 27780
Number of extensions: 255151
Number of successful extensions: 985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)