Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M20
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   1.6  
02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.1  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           28   8.4  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/89 (25%), Positives = 25/89 (28%)
 Frame = +2

Query: 386 PPNGXGFXXXXXXXNXPXPPXXGPXXXXXAPPPGFXXKXXXKPXXXXKKKGGPXXXXKKX 565
           PP G GF       N   PP          PPP         P        GP    +  
Sbjct: 13  PPQG-GFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPP--GPPPPHQPQ 69

Query: 566 GXXXPXPPXKXXXXXPPXXXKXPPXXXPP 652
               P PP +     PP     PP   PP
Sbjct: 70  FNFGPGPPQQQQPPPPPQMYYQPPPPPPP 98


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/74 (32%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
 Frame = +2

Query: 440 PPXXGPXXXXXAPPPGFXXKXXXKPXXXXKKKGGPXXXXKKXGXXXPXPP--XKXXXXXP 613
           PP   P     APPP    K    P      KG P     K G   P PP         P
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPP---KGPPPPPPAK-GPPPPPPPKGPSPPPPPP 369

Query: 614 PXXXKXPPXXXPPK 655
           P   K  P   PPK
Sbjct: 370 PGGKKGGPPPPPPK 383



 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
 Frame = +2

Query: 434 PXPPXXGPXXXXXA----PPPGFXXKXXXKPXXXXKKKGGPXXXXKKXGXXXP 580
           P PP  GP     A    PPP         P     KKGGP     K G   P
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRP 389



 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/62 (29%), Positives = 18/62 (29%)
 Frame = +2

Query: 476 PPPGFXXKXXXKPXXXXKKKGGPXXXXKKXGXXXPXPPXKXXXXXPPXXXKXPPXXXPPK 655
           PPP         P      K  P     K     P PP K     PP     PP   PP 
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKG--PPPPPPAKGPPPPPPPKGPSPPPPPPPG 371

Query: 656 KK 661
            K
Sbjct: 372 GK 373


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 22/92 (23%), Positives = 23/92 (25%)
 Frame = +2

Query: 362 PXPKXGLTPPNGXGFXXXXXXXNXPXPPXXGPXXXXXAPPPGFXXKXXXKPXXXXKKKGG 541
           P P     PP+             P PP  G      APPP         P         
Sbjct: 283 PPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAP---S 339

Query: 542 PXXXXKKXGXXXPXPPXKXXXXXPPXXXKXPP 637
           P       G   P PP       PP     PP
Sbjct: 340 PSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPP 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,477,771
Number of Sequences: 37544
Number of extensions: 268845
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)