Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M17
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    29   0.56 
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.2  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    26   5.2  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.2  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   5.2  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   6.9  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.1  

>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 99  RNMARIYQLAVDLGGRERSLNRCREKSSFVALKNRPDVVVQYG 227
           R +A  Y+  + LGG++ S+    EK  F ++ N  DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 654 PXTNHPRXNIH---FHQSPDAVXEGVRAGVKASVVIRGSISVSHPLRHW 517
           P T+    ++H   F  S  A+    ++ +        S+SVS+PL HW
Sbjct: 117 PLTSGMNKSVHEYPFTLSESAISSSHKSSIPERRNFDSSVSVSNPLLHW 165


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 191 GNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFG 84
           G  T   S +IQ S   S +     DP H  SD+FG
Sbjct: 31  GKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFG 66


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 464 KLRALLVVIPRILRSPPPTHPLIEDV 387
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 114 IYQLAVDLGGRERSLNRCREKSSFVALKNRPDVV 215
           ++Q A+ LG   RS  RC  KSSF+    + DVV
Sbjct: 33  LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 141 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 43
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 329 LVTHKELALKVSSIIGTRVYVFDPSCY 249
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,467
Number of Sequences: 5004
Number of extensions: 50896
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)