Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M17
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1464 - 27317282-27318037                                         24   4.0  
12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.1  
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937...    28   9.5  

>08_02_1464 - 27317282-27318037
          Length = 251

 Score = 24.2 bits (50), Expect(2) = 4.0
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -1

Query: 606 DAVXEGVRAGVKASVVIRGSISVSHPLRHWAWLKGVSPP 490
           DA     RA   A + +RG  +        AWL  V PP
Sbjct: 87  DAADAAARAHDAAMLALRGRAAACLNFADSAWLLAVPPP 125



 Score = 23.4 bits (48), Expect(2) = 4.0
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 678 QPDHQIPDPXTNHPRXNIHFHQSPDAVXEGVR 583
           +P  ++  P +  P     FH++   V  GVR
Sbjct: 28  EPCRRLSPPSSKRPAGRTKFHETRHPVFRGVR 59


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 80  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 181
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>02_02_0718 -
           13290764-13290897,13292375-13293041,13293364-13293719,
           13294559-13294629,13295326-13295336
          Length = 412

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 440 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 351
           +P++L+SPP T+  IED    +  + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,855,504
Number of Sequences: 37544
Number of extensions: 378864
Number of successful extensions: 977
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)