Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M14
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    28   9.3  
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    28   9.3  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   9.3  

>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +3

Query: 660 PPAPXPGSPXGXXXPIVXXXLXSPXXAXXPXCXLPP 767
           PP P P SP     P+       P     P C  PP
Sbjct: 90  PPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPP 125


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
 Frame = +3

Query: 429 PXNPXGLGPPPXXXXSXESSXXXXKXXS---XXTPPXXXGXFSPPPGCLQP 572
           P  P G GPPP        S    +         PP   G + PPP    P
Sbjct: 403 PGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPP 453


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 429 PXNPXGLGPPPXXXXSXESSXXXXKXXSXXTPPXXXGXFSPPP 557
           P  P G G PP                S   PP   G  SPPP
Sbjct: 97  PPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPP 139



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +3

Query: 429 PXNPXGLGPPPXXXXSXESSXXXXKXXSXXTPPXXXGXFSPPP 557
           P  P G G PP                S   PP   G  SPPP
Sbjct: 128 PPPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPP 170


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 29/101 (28%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
 Frame = +1

Query: 214  GPARGPXAPNKR--SGRTTTPVLDXGPXL------LKKVGNKXPEXXGGCPPGXXSXPXX 369
            GP RG  +P  R  S R   P    GP +           N+ P   GG PP        
Sbjct: 1511 GPGRGMPSPMMRGSSMRGGFPQRGGGPGMGPSQYYHDSPQNRGPPM-GGLPPPHGGMNGW 1569

Query: 370  X*GXPXXXXGXXXXXXPXFXXXTPXGLGPPPXXGXPRNLRP 492
              G P    G      P      P  LG PP    P N  P
Sbjct: 1570 RGGPPPPRGGSHCQGPPPLMGGPPPRLGMPPPGPPPPNGGP 1610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,054,848
Number of Sequences: 27780
Number of extensions: 202512
Number of successful extensions: 283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)