Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M12
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   132   4e-32
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   130   3e-31
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    38   0.001
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   4.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.4  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  132 bits (320), Expect = 4e-32
 Identities = 62/97 (63%), Positives = 74/97 (76%)
 Frame = -3

Query: 610 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARE 431
           ++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLARE
Sbjct: 124 IVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLARE 183

Query: 430 VLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 320
           VLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 184 VLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  130 bits (313), Expect = 3e-31
 Identities = 61/95 (64%), Positives = 73/95 (76%)
 Frame = -3

Query: 610 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLARE 431
           +IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLARE
Sbjct: 125 IIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLARE 184

Query: 430 VLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 326
           VLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 185 VLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -3

Query: 610 LIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 434
           +++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 571 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 461
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 463 IGLMWWLLAREVLRLRGVLPRDQRWD 386
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 408 FPVTSAGML--WLICSSTVTLKKVKRM 334
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 639 IQXAFRXLVX*LYWTLHKTINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSHATPSLPTL 463
           ++  FR +    + +L+K + PLL   +  F  LL + +TP   DL+T L    P   +L
Sbjct: 721 LRALFRGIGGGRFESLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSL 780

Query: 462 LV 457
           L+
Sbjct: 781 LL 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,166
Number of Sequences: 5004
Number of extensions: 50415
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)