Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_M09
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 34 0.14
05_06_0281 + 26912419-26913099 33 0.18
02_02_0063 + 6481568-6481570,6481922-6482470 33 0.24
11_07_0002 - 27171791-27172222 32 0.55
09_02_0279 + 6702517-6702948 32 0.55
11_01_0763 + 6402901-6403971,6404581-6404826 31 1.3
07_03_0315 - 16674660-16674712,16674966-16675158 29 2.9
04_04_1019 + 30166514-30166585,30167207-30167841,30168505-301686... 29 2.9
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 29 2.9
09_02_0015 - 2980811-2980924,2981231-2981266,2981447-2981519,298... 29 3.9
09_01_0043 + 790859-790873,791410-791603,792521-792605,792719-79... 29 3.9
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 3.9
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 29 3.9
01_06_0752 + 31704071-31704787 29 3.9
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 28 6.8
11_06_0610 - 25449085-25453284 28 6.8
02_01_0302 - 2021221-2023305 28 6.8
07_03_0288 + 16285485-16285721,16285811-16286184,16286499-162868... 28 9.0
03_03_0164 - 14979364-14979479,14979613-14980102 28 9.0
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 33.9 bits (74), Expect = 0.14
Identities = 34/119 (28%), Positives = 43/119 (36%), Gaps = 10/119 (8%)
Frame = +1
Query: 274 EPSRRIEGSETSAVSVRQPVGPPRRCR-WCPGIPRWTRTSLPGRDAIHRRPVALF---TP 441
+P R S T A S P PPRR W P W T PG+ A P AL+ TP
Sbjct: 243 DPMRAFPASLTEAAS-SAPAFPPRRPNSWAPSPAPWPYT--PGQQAKFSPPPALYASPTP 299
Query: 442 RQXXXXXXXXXXXXXXXXXXXXXXGG------DRHLQGPGRTGVFPPPAPGSTATDRCG 600
GG +R++ P R + PPP+P + D G
Sbjct: 300 SPPTFAGGYLQSRLSGETAPMIIPGGGRGPVHNRNMSDPVRGFMLPPPSPKNIRGDSGG 358
>05_06_0281 + 26912419-26913099
Length = 226
Score = 33.5 bits (73), Expect = 0.18
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 232 QPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRD 405
+P G P + P P+ ++ +R+P GP W PG+P T+T L G D
Sbjct: 82 RPVGPTPPPPSHPVVPTPTQLAADDDGGLLRRPGGPTPPSPWHPGVP--TQTQLAGGD 137
>02_02_0063 + 6481568-6481570,6481922-6482470
Length = 183
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = -3
Query: 437 VNRATGRRCIASRPGRLVLVQRGIPGHQRHRLGGPTG 327
V ATGRR A+RPGRLV + + G +R GP G
Sbjct: 127 VTVATGRRDAATRPGRLVAMAATV-GSRREERRGPAG 162
>11_07_0002 - 27171791-27172222
Length = 143
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 423 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 301
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>09_02_0279 + 6702517-6702948
Length = 143
Score = 31.9 bits (69), Expect = 0.55
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -2
Query: 423 RSTVYRVPTRQAGSGPAGYSGTPAAPSGRPDG----LPYRDGRRF 301
RS+ + +AGS PAG G+PA G P G P GR F
Sbjct: 55 RSSAASTSSARAGSTPAGVRGSPAGAGGSPGGGSGSTPVGGGRSF 99
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Frame = +3
Query: 102 ADRGPKDFRAHPLNDSP--ATLTPDVQSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADG 275
A+ P + P + SP A PD G GRGA R RG G DG
Sbjct: 21 AEADPSEETLDPASPSPDLAIPWPDPAGVDAGGGG-GRGAATHQGRRRWRGVGSGGGGDG 79
Query: 276 AFEANRRL*NVGRLGTAARRAAQ 344
A + RRL AA R A+
Sbjct: 80 AATSRRRLARQPAAAVAAARCAR 102
>07_03_0315 - 16674660-16674712,16674966-16675158
Length = 81
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 425 TGRRCIASRPGRLVLVQRGIPGHQRHRLGGPTGCRTETADVSEPSIRLEGSVG 267
TG + + S GR +L I +R R+G P GC+ + S I L VG
Sbjct: 11 TGEKGVRSGVGRDILRDEKIK--ERKRMGQPAGCQADLLICSPVKINLFSQVG 61
>04_04_1019 +
30166514-30166585,30167207-30167841,30168505-30168645,
30169604-30170300
Length = 514
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 532 QGPGRTGVFPPPAPGSTATDRCGKGXA 612
Q P +FPPP S+ TD CG G A
Sbjct: 62 QLPAEPMLFPPPPSLSSTTDGCGAGGA 88
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 313 VSVRQPVGPPRRCRWCPGIPRWTR 384
+ + + V PP R WCP RW R
Sbjct: 1 MEIARVVAPPLRLAWCPASRRWGR 24
>09_02_0015 -
2980811-2980924,2981231-2981266,2981447-2981519,
2981608-2981882,2982286-2982504,2983537-2983828,
2983863-2984221,2984634-2984714,2984746-2984889,
2985235-2985538,2985617-2985849
Length = 709
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -3
Query: 449 RCRGVNRATGRRCIASRPGRLVLVQRGIPGHQRHRL-----GGPTGCRTETADVSEPSIR 285
+ R +N+ R C + R + Q+GI G++++R G P + T D+ P++R
Sbjct: 447 KIRELNQKEVRSCTSDFKRRDLCQQKGIFGYEKNRFWEDISGAPICKKPRTNDIHNPTLR 506
Query: 284 L 282
L
Sbjct: 507 L 507
>09_01_0043 +
790859-790873,791410-791603,792521-792605,792719-793075
Length = 216
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 393 QAGSGPAGYSGTPAAPSGRPDGLPYRDG 310
++GSG AG G+ A GR DG RDG
Sbjct: 118 RSGSGKAGCVGSRADQDGRLDGREVRDG 145
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 170 RPIPSEVRTRMR*GGYRGQHYNQTARLTPR 259
R PSE+R+R R G RG+ Y+Q +PR
Sbjct: 121 RKKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>07_03_0111 +
13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 150 PATLTPDVQSPPRSEPG*GRGATAVNTTTRRRGSPQGRPADGAFEA 287
P D + P EP + +A T RR GSP PA A +A
Sbjct: 129 PPPSPKDAAADPAKEPSGSKAGSAAATGGRRTGSPPPSPAPVAKDA 174
>01_06_0752 + 31704071-31704787
Length = 238
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 544 RTGVFPPPAPGSTATDRC 597
R GV PPP P STA RC
Sbjct: 159 RAGVEPPPPPPSTAAARC 176
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 28.3 bits (60), Expect = 6.8
Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Frame = +1
Query: 181 LRGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRCRWC 360
+ G+ PD QP A P+D QP PS + TS R+ G
Sbjct: 190 VHGEQPDGERDADEHRGQPHQRAAPRDVQPPSPSS--SPATTSPAHPRRAHGQVLLGSH- 246
Query: 361 PGIPRW-TRTSLPGRDAIHRRPVALF 435
P P W + LP R R P+ F
Sbjct: 247 PRGPHWRVQGHLPQRQGPRRVPIDFF 272
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +1
Query: 175 NPLRGQNPDEVGGLPRSTLQ-PDGAAHPKDAQPTEPSRRIEGSETSAVSVRQPVGPPRRC 351
+P + P+E P S + P AHP P+E S E+S + + PP
Sbjct: 769 SPPKSSPPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTPAEESSPPTPEKSPSPPSGH 828
Query: 352 RWCPGIPRWTRTSLPGRDA 408
P P ++S P +A
Sbjct: 829 EGTPPSP--VKSSSPPPEA 845
>02_01_0302 - 2021221-2023305
Length = 694
Score = 28.3 bits (60), Expect = 6.8
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Frame = +3
Query: 129 AHPLNDSPATLTPDVQSP-PRSEPG*G-RGATA-VNTTTRRRGSPQGRPADGAFEANRRL 299
AHP + S A +P P PG G +G A V++ RRRG P+ +
Sbjct: 370 AHPFDCSKAQCQAASYTPTPGGSPGRGGQGPPAPVSSPPRRRGPYPQPPSSSPTPSYPSP 429
Query: 300 *NVGRLGTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPS 419
+ + + P S TP + P GS TPS
Sbjct: 430 SSSYPAPPGSNTPSYPSPPSSATTPSSHSPPGGSSSTTPS 469
>07_03_0288 +
16285485-16285721,16285811-16286184,16286499-16286892,
16286917-16287806,16291189-16291446,16291518-16291628,
16291697-16291775,16291880-16291972,16292095-16292280
Length = 873
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 126 RAHPLNDSPATLTPDVQSPPRSEP 197
R PL SP+ P V SPPR EP
Sbjct: 449 RPEPLVASPSGPEPPVASPPRPEP 472
>03_03_0164 - 14979364-14979479,14979613-14980102
Length = 201
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +1
Query: 184 RGQNPDEVGGLPRSTLQPDGAAHPKDAQPTEPSRRIE-GSETSAVSVRQPVGPPRRCR 354
RG+ G +T+ DG+ H + P P R + G E V+ P G RR R
Sbjct: 83 RGRRRQRRGPGTATTMLEDGSIHTQRGSPPLPPRSGQRGGEEGEVAAAAPGGGGRRWR 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,282,338
Number of Sequences: 37544
Number of extensions: 498465
Number of successful extensions: 2075
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2072
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -