Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M05
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    29   0.99 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.0  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.3  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   7.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   7.0  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.2  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    25   9.2  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.2  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -2

Query: 641 NHPRLNIHFHQSPDAVXEGVRAGXKPPLSSEAPSAYLTPSSLGMAKGVSPPY-FQVND 471
           N P   + F      +  GV     PP SS+ P  Y+       AKG+S  Y   VND
Sbjct: 16  NKPEEVVEFPSQGKFIIVGVPGAFTPPCSSQVP-GYIANEKQFAAKGISGIYVVAVND 72


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = -3

Query: 352 KVKIADNSLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNTRTVLKDNKTAL 173
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+       +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVV---QLLSMKTSDTLF 664

Query: 172 LSASIQASLPSSEIYRQL 119
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 463 KLRALLVVIPRILRSPPPTHPLIEDV 386
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 140 LRDLPPVGRSSPCFFRLLWSLRKILIPYSSQFW 42
           L++L  +G  SPC  RL   L  +++P    FW
Sbjct: 21  LKELQHIGVPSPCNLRLYHELISVIVP---TFW 50


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +1

Query: 466 DSSFT*K*GGETPLAMPSDEGVRYADGASDDNGGFXPARTP 588
           +SSF    G  TPL    D G  YAD A+  N    PA TP
Sbjct: 160 NSSFVGNSGSGTPL--DGDSGSFYADSANLTNREPYPAWTP 198


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 328 LVTHKELALKVSSIIGTRVYVFDPSCY 248
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 468 ITSFAPY*SSFHAYSAPLLQLTPSSKTSS 382
           + SF PY S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 665 IKSXIPXT--NHPRLNIHFHQSPDAVXE-GVRAGXKPPLSSEAPSAYLTPS 522
           ++  +P T  NHP+ +I FH   + V +       KP ++S+A +A +  S
Sbjct: 23  VQHLLPYTARNHPQFSIWFHNDFEPVKDLKALLKDKPQIASQAVTALVNVS 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,083
Number of Sequences: 5004
Number of extensions: 50182
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)