Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M05
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.1  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   4.1  
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123     29   5.5  
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786     28   7.2  
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405...    28   7.2  
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937...    28   9.6  

>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 79  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 180
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 238  PPFDTVLYDNTRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 59
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 58   ILHSF 44
            +LHSF
Sbjct: 1408 LLHSF 1412


>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
          Length = 422

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 321 LIRNWPSRFLLS*APESTSSIPLATFQLLPSIPYCTTTPGR 199
           + R  P +FL+   P S  S   +  +LLPS P+  + PG+
Sbjct: 275 IARQTPHKFLVKSPPSSLGSKLKSHGKLLPSRPFTVSPPGK 315


>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
          Length = 489

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = -3

Query: 469 NHKLRALLVVIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNSLVTHKELALKVSS 290
           ++ L+A L+ +  ++  PP  HPLI     + + ++  +    A  SLV+        +S
Sbjct: 125 DYVLKASLLHLHHLIDPPPRHHPLITSTSSSAHHSLPPHAAAAAHVSLVSSSSTDANANS 184

Query: 289 II 284
           ++
Sbjct: 185 VV 186


>06_03_0649 +
           23138442-23138842,23139576-23139849,23139929-23140562,
           23140771-23140826,23141178-23141282,23141295-23141535,
           23142686-23142690
          Length = 571

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
 Frame = -2

Query: 683 GYINXIIKSXIPXTNHPRLNIHFHQSPDAVXEGVRAGXKPPLSSEAPSAYLTPSSLGMAK 504
           G++N I ++  P       N HF         G   G  P +S + PSAY TP+     +
Sbjct: 143 GFVNFIQQNCPPQPQQQGENFHF--------VGHNMGFNP-ISPQPPSAYGTPTPQATNQ 193

Query: 503 GVSPP-YFQVNDESQASRLISRHSTH 429
           G S        D +  SR   +  TH
Sbjct: 194 GTSTNIMIDEEDNNDDSRAAKKRWTH 219


>02_02_0718 -
           13290764-13290897,13292375-13293041,13293364-13293719,
           13294559-13294629,13295326-13295336
          Length = 412

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 439 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 350
           +P++L+SPP T+  IED    +  + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,893,144
Number of Sequences: 37544
Number of extensions: 373266
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)