Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_M04
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 116 4e-27
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 29 0.56
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 3.0
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 27 3.0
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 26 5.2
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 9.2
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 25 9.2
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 25 9.2
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 9.2
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 9.2
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 9.2
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 116 bits (279), Expect = 4e-27
Identities = 72/193 (37%), Positives = 91/193 (47%)
Frame = -2
Query: 701 AHNTGLGSRENLFFPGSFYPYQDFKGYY*NHQRCTHS*SPVNKVGASEATLLNMLNISPF 522
A NTG+ + FF P + +G H S KVG SEATLLNMLNISPF
Sbjct: 123 AGNTGMEPGKTSFFQALGIPTKITRGTI-EITSDVHLVSKDAKVGPSEATLLNMLNISPF 181
Query: 521 SYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIAN 342
+YG+ V +YD G +F+PEILD+ EDL + + + A+SL YPTI S HS+ N
Sbjct: 182 TYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVN 241
Query: 341 GFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXX 162
+KNL+ K F+ DPS F
Sbjct: 242 AYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPAAEAAAEEE 299
Query: 161 XXSDDDMGFGLFD 123
SD+DMGFGLFD
Sbjct: 300 EESDEDMGFGLFD 312
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 29.5 bits (63), Expect = 0.56
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3
Query: 261 LNELLDGGSFFKLNLCDSSDGQKILETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTE 440
L L+ G S+ SSDG + + D ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 441 ILWFDVQNF 467
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +3
Query: 258 VLNELLDGGSFFKLNLCDSSDGQKILETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGT 437
V L D G + +C+ +D +I++T + +++S KS + N EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075
Query: 438 EI 443
E+
Sbjct: 1076 EL 1077
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 466 SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLFTGLQE 594
S +V +S TCL + NGE+ + ++S + T T +QE
Sbjct: 204 SSWNVVGDSATCLLSCSSRNGEIRILKIAISSHSDTFDTAMQE 246
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +1
Query: 427 NLARRSSGLMSRISGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLFTGLQEC 597
++ +R SGL + + +Y +++ Y+ + L+ + S P L GLQEC
Sbjct: 36 SMDKRLSGLEASAGILRDDVTNYNRVSSNIYDTLKEMESLQVIHSHLPVLQKGLQEC 92
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 152 DDDMGFGLFD 123
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 152 DDDMGFGLFD 123
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 152 DDDMGFGLFD 123
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 152 DDDMGFGLFD 123
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 152 DDDMGFGLFD 123
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2
Query: 152 DDDMGFGLFD 123
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,882
Number of Sequences: 5004
Number of extensions: 49394
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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