Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP17_T7_M03
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    66   5e-12
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    62   9e-11
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    29   0.57 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.1  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    27   4.0  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = -1

Query: 510 LLFPCNTKXSHXIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYREP 364
           +  P N K    IGL+W+LLAREVLR+RG L R   WDV+ DL+FYR+P
Sbjct: 161 IAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 62.1 bits (144), Expect = 9e-11
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = -1

Query: 501 PCNTKXSHXIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYREP 364
           P N K    IGL W+LLAREVLRLRG + R   W+V+ DL+FYR+P
Sbjct: 165 PINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 359 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIK 469
           L  S+  N+S+T +++ SR    ST RS STS AN H  K
Sbjct: 99  LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRK 138


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 428 VVCFPVTSAGMLWLICSSTVNPEESEKD 345
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 334 ACCSSFSLSSGFTVEEQINHNIPALVTGKHTTKPQHFTCQQ 456
           A   +  LSS  T   Q+ +N P   T K   K +HF  QQ
Sbjct: 28  ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 474 IGLMWWLLAREVLRLRGVLPRDQRWD 397
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,257
Number of Sequences: 5004
Number of extensions: 37200
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)