Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP17_T7_M02
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.7
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.7
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 27 2.7
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.6
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.8
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 4.8
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 4.8
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 8.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 8.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 8.3
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 75 TFTTNTPSVSCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTSAVSLGS 224
+++TN + T S T S P S S ++PT VP+ S+ + S
Sbjct: 270 SYSTNLTTTGSTTTTGSATV---SSSPFYSNSSVIPTSVPSSVSSFTSSS 316
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +1
Query: 178 CRLTFPHTLLQSPWVPFXVSWLVAVCF 258
C LT PHT + W+P + A+ +
Sbjct: 470 CDLTIPHTAINDSWLPMKLKETNAISY 496
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 260 SKHTATSQETKNGTQGDCRSVCGNVSRHNHRAGLPRA--LRAWYLGHTGGH 114
S T+ +TKN T GD GN+S N L + LR+ Y+ H GH
Sbjct: 42 SNETSGYDQTKNFTHGDGDMSLGNLSELNVATDLLESLDLRSMYM-HGYGH 91
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 69 HVTFTTNTPSVSCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTSAVSLGSVF 230
H++ TN+ +P+S+T+ P +Q S +P TS+ S F
Sbjct: 121 HISNFTNSQKYFANDLPNSLTDQPLAQPSASQRSTWLPCSAAVSTSSPSSDPFF 174
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 202 VCVGTSVGTITEPDCLGPCEPGTSVTLEGI 113
V V ++VGT+TE G E T++ EGI
Sbjct: 83 VIVVSTVGTVTETTISGSTEYTTTIPAEGI 112
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 102 SCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTSAV 212
S T P+S T S+G + +G P PT+ S +
Sbjct: 383 SANTAPNSPTSANSSEGNQGNGPTTYPIKPPTNISEI 419
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 202 VCVGTSVGTITEPDCLGPCEPGTSVTLEGI 113
V V ++VGT+TE G E T++ EGI
Sbjct: 83 VIVVSTVGTVTETTISGSTEYTTTIPAEGI 112
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 216 RRLQKCVWERQSAQSPSRTASGPASLVPR 130
R +K W+RQS P + S S++PR
Sbjct: 503 RNDEKGTWDRQSLPPPQPSISRRPSVIPR 531
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/59 (27%), Positives = 21/59 (35%)
Frame = +3
Query: 48 PT*VFPRHVTFTTNTPSVSCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTSAVSLGS 224
PT T TP+ T VT G G S + PT T T+ V + +
Sbjct: 1080 PTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTATGTTTVVINT 1138
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 75 TFTTNT--PSVSCQTMPSSVTEVPGSQGPRQSGSVIVPTDVPTHTSA 209
+F N+ PS S QT P+S + + GSQ +++ S + ++TS+
Sbjct: 635 SFNVNSVGPS-SSQTTPTSSSSITGSQSLKETSSPAYVSSTVSYTSS 680
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,988,728
Number of Sequences: 5004
Number of extensions: 32372
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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